Release 51
(Aug 25, 2023):
A sum of 12,478 new QTL/associations have been curated into the
database. (New additions less obsolete/retracted ones: Catfish: 0;
Cattle: 1,113; Chicken: 235; Goat: 429; Horse: 0; Pig: 5,972;
Sheep: 4,729; Rainbow trout: 0 -- Net increase: 12,478).
To date, the current total number of QTL in the database: 278,738
[Breakdown by species -- Cattle: 195,011 (on 680 traits);
Chicken: 18,646 (on 372 traits); Goat: 558 (on 26 traits); Horse:
2,649 (on 65 traits); Pig: 54,816 (on 673 traits); Sheep: 4,729
(on 272 traits); Rainbow trout: 2,329 (on 47 traits)].
(
This is a joint release with the 19th CorrDB
release.)
Database developments notes:
(1)
We continued the transition from using "sibling traits" to "trait
variants" (see our recent publication "A combinatorial approach implementing
new database structures to facilitate practical data curation management of
QTL, association, correlation and heritability data on trait variants"; DOI:
10.1093/database/baad024). Since April 2023, 1,597 new trait variants have
been created on QTLdb, linked to 3,128 previously curated QTL/association
data, and 1,494 new trait variants created on CorrDB, linked to 7,037
previously curated correlation/heritability data.
(2)
Given the fact that the linkage-map–based QTL/association data being
curated into the QTLdb has significantly diminished in the past 6 years (e.g.
2018: 115; 2019: 84; 2020: 1; 2021: 2; 2023: 0), and the fact that all current
genome works have already shifted to using sequence maps, we plan to cease the
curation of linkage-map–based QTL/association data in 2023, and place all
previously curated linkage-map–based QTL/association data in separate
downloads/archives by the next database release. Any comments regarding this
move are welcome.