chromosome 2
100800 bytes allocated in orders_morecore
3024000 bytes allocated in morecore
Option chosen: all
Current values for parameters:
par_file = chr2.par
dat_file = chr2.dat
gen_file = chr2.gen
ord_file = chr2.ord
nb_our_alloc = 3000000 [# bytes reserved for our_alloc]
SEX_EQ = 1 [0 = sex specific analysis, 1 = sex equal]
TOL = 0.010000
PUK_NUM_ORDERS_TOL = 6
PK_NUM_ORDERS_TOL = 8
PUK_LIKE_TOL = 2.000
PK_LIKE_TOL = 2.000
use_ord_file = 0
write_ord_file = 0
use_haps = 1
Haplotyped system (distances forced to 0.0):
0 CRYG1-5 2 CRYG1-5_2 4 CRYG1-5_3
Haplotyped system (distances forced to 0.0):
1 D2S54 3 D2S54_2
Haplotyped system (distances forced to 0.0):
24 D2S38_2 23 D2S38
Haplotyped system (distances forced to 0.0):
40 D2S5_2 39 D2S5
Haplotyped system (distances forced to 0.0):
42 D2S1_2 41 D2S1
Haplotyped system (distances forced to 0.0):
44 TPO 45 TPO_2
Haplotyped system (distances forced to 0.0):
54 APOB_2 53 APOB
Haplotyped system (distances forced to 0.0):
64 D2S61_2 63 D2S61
Haplotyped system (distances forced to 0.0):
75 TGFA_3 73 TGFA_2 72 TGFA
76 TGFA_4
N.B. Only the first locus in each set is retained in the orders
objects, but the remaining loci are used in all likelihood calculations.
0 CRYG1-5
1 D2S54
5 ACP1
10 D2S25
14 D2S35
17 D2S19
20 D2S41
21 D2S40
22 D2S39
24 D2S38_2
26 D2S30
28 D2S31
31 D2S28
33 D2S62
40 D2S5_2
42 D2S1_2
44 TPO
49 LCO
50 D2S70
54 APOB_2
55 D2S51
56 D2S48
59 D2S45
61 LCT
65 D2S47
66 D2S6
68 D2S44
69 D2S43
70 D2S46
77 Prot_C/pcr
ordered loci:
0 21 55 61 68 77 1 49 20 69 10 33 24 59 26 28 40 31 66 17 70 56 54 50 44 65 42 5
inserted loci:
14 22
14 0 22 21 55 61 68 77 1 49 20 69 10 33 24 59 26 28 40 31 66 17 70 56 54 50 44 65 42 5 -1201.412
0 14 22 21 55 61 68 77 1 49 20 69 10 33 24 59 26 28 40 31 66 17 70 56 54 50 44 65 42 5 -1201.466
14 0 21 22 55 61 68 77 1 49 20 69 10 33 24 59 26 28 40 31 66 17 70 56 54 50 44 65 42 5 -1202.443
0 14 21 22 55 61 68 77 1 49 20 69 10 33 24 59 26 28 40 31 66 17 70 56 54 50 44 65 42 5 -1202.523