Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
27
Number of QTL / associations found:
15,770
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
5347.63215
29
9e-41
9.310345e-41
Chromosome 1
1150.54479
29
1.168135e-223
1.752203e-222
Chromosome 2
1478.58534
29
2.008258e-293
6.024774e-292
Chromosome 3
2389.01778
29
9e-41
9.310345e-41
Chromosome 4
2301.22080
29
9e-41
9.310345e-41
Chromosome 5
551.99043
29
5.587278e-98
4.190459e-97
Chromosome 6
2054389.70250
29
9e-41
9.310345e-41
Chromosome 7
60.54588
29
0.0005279885
5.279885e-04
Chromosome 8
3099.88647
29
9e-41
9.310345e-41
Chromosome 9
3790.75788
29
9e-41
9.310345e-41
Chromosome 10
2804.44464
29
9e-41
9.310345e-41
Chromosome 11
291.49281
29
3.891601e-45
2.334961e-44
Chromosome 12
7482.07044
29
9e-41
9.310345e-41
Chromosome 13
917.69760
29
2.025397e-174
2.025397e-173
Chromosome 14
15954.50601
29
9e-41
9.310345e-41
Chromosome 15
4643.26938
29
9e-41
9.310345e-41
Chromosome 16
3383.70318
29
9e-41
9.310345e-41
Chromosome 17
5787.21699
29
9e-41
9.310345e-41
Chromosome 18
7799.01642
29
9e-41
9.310345e-41
Chromosome 19
4612.43430
29
9e-41
9.310345e-41
Chromosome 20
5672.84769
29
9e-41
9.310345e-41
Chromosome 21
3489.99111
29
9e-41
9.310345e-41
Chromosome 22
5925.96648
29
9e-41
9.310345e-41
Chromosome 23
7018.97832
29
9e-41
9.310345e-41
Chromosome 24
6905.51676
29
9e-41
9.310345e-41
Chromosome 25
7719.16365
29
9e-41
9.310345e-41
Chromosome 26
8578.11276
29
9e-41
9.310345e-41
Chromosome 27
7521.32898
29
9e-41
9.310345e-41
Chromosome 28
7521.32898
29
9e-41
9.310345e-41
Chromosome 29
8369.49213
29
9e-41
9.310345e-41
Chi-squared (χ2) test: Which of the 27 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at slaughter
14.83547
26
0.9602693
9.602693e-01
Average daily gain
747.53325
26
7.589601e-141
6.830641e-140
BWF scaled by BWI
130.02432
26
8.47274e-16
1.429775e-15
Body capacity
64.78492
26
3.691862e-05
4.530922e-05
Body circumference
278.17495
26
4.710473e-44
1.413142e-43
Body depth
1024.55303
26
2.318069e-199
6.258786e-198
Body height
546.70405
26
7.319396e-99
3.293728e-98
Body length
265.01959
26
1.902126e-41
5.135740e-41
Body size
51.40747
26
0.0021271
2.392987e-03
Body weight
641.1966
26
1.491552e-118
1.006798e-117
Body weight gain
555.27728
26
1.212294e-100
6.546388e-100
Cannon bone circumference
94.95946
26
8.714841e-10
1.176504e-09
Chest width
156.6552
26
1.260299e-20
2.617544e-20
Finishing precocity
340.84378
26
1.306732e-56
4.410220e-56
Growth index
140.10709
26
1.321521e-17
2.548648e-17
Head length
58.04639
26
0.0003052541
3.583418e-04
Head width
117.5341
26
1.330451e-13
2.113069e-13
Hip width
234.58048
26
1.814325e-35
4.082231e-35
Longissimus muscle area growth
69.42963
26
8.029562e-06
1.032372e-05
Maturity rate
470.72326
26
3.862402e-83
1.489784e-82
Metabolic body weight
2299.28686
26
9e-41
2.209091e-40
Relative growth rate
112.2763
26
1.076932e-12
1.615398e-12
Rump length
135.61142
26
8.515257e-17
1.532746e-16
Rump width
829.43647
26
4.320952e-158
5.833285e-157
Shoulder width
38.83372
26
0.05056641
5.461172e-02
Subcutaneous fat increase
36.36967
26
0.08507718
8.834938e-02
Thigh width (maximum)
108.22568
26
5.302468e-12
7.535086e-12
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
2196958.462650
Number of traits:
27
df
=
754
Number of QTLs:
15,770
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
