Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of conformation traits:
21
Number of QTL / associations found:
3,841
Number of chromosomes where QTL / associations are found:
30
Chi-squared (χ2) test: are conformation traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
3989.87988
29
9e-41
1.588235e-40
Chromosome 1
137.62371
29
4.501844e-16
6.752766e-16
Chromosome 2
36.74055
29
0.1529775
1.765125e-01
Chromosome 3
0.00021
29
0.998329325823115
9.983293e-01
Chromosome 4
168.30639
29
1.420760e-21
2.243305e-21
Chromosome 5
3738.16422
29
9e-41
1.588235e-40
Chromosome 6
2400.09084
29
9e-41
1.588235e-40
Chromosome 7
1075.24830
29
1.05152e-207
1.051520e-206
Chromosome 8
111.16182
29
1.486877e-11
2.124110e-11
Chromosome 9
168.30639
29
1.420760e-21
2.243305e-21
Chromosome 10
757.68420
29
8.558545e-141
4.279272e-140
Chromosome 11
3738.16422
29
9e-41
1.588235e-40
Chromosome 12
347.56911
29
2.740971e-56
7.475375e-56
Chromosome 13
110.59335
29
1.846431e-11
2.517860e-11
Chromosome 14
303.74295
29
1.477903e-47
3.694757e-47
Chromosome 15
998.74950
29
1.590269e-191
9.541614e-191
Chromosome 16
37.06857
29
0.1444784
1.765125e-01
Chromosome 17
0.67809
29
0.998329325823115
9.983293e-01
Chromosome 18
276.16575
29
4.018832e-42
9.274228e-42
Chromosome 19
0.00021
29
0.998329325823115
9.983293e-01
Chromosome 20
36.74055
29
0.1529775
1.765125e-01
Chromosome 21
47.58789
29
0.01621123
2.114508e-02
Chromosome 22
496.76151
29
1.331676e-86
4.438920e-86
Chromosome 23
378.42672
29
1.710106e-62
5.130318e-62
Chromosome 24
1419.62415
29
7.376124e-281
2.212837e-279
Chromosome 25
552.39702
29
4.604803e-98
1.726801e-97
Chromosome 26
0.17514
29
0.998329325823115
9.983293e-01
Chromosome 27
610.98492
29
3.38774e-110
1.451889e-109
Chromosome 28
1158.24240
29
2.722728e-225
4.084092e-224
Chromosome 29
1050.60165
29
1.730122e-202
1.297591e-201
Chi-squared (χ2) test: Which of the 21 conformation traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Angularity
43.99169
20
0.001508793
1.980291e-03
Anogenital distance
33.33746
20
0.03097182
3.252041e-02
Body condition score
160.36983
20
6.370333e-24
6.688850e-23
Body form composite index
40.8008
20
0.003950875
4.880493e-03
Bone quality
70.05448
20
1.784441e-07
4.163696e-07
Conformation score
131.26541
20
2.255697e-18
9.473927e-18
Dairy capacity composite index
138.57619
20
9.421473e-20
6.595031e-19
Dairy form
100.63998
20
9.674477e-13
3.386067e-12
Ear length
35.70273
20
0.01666550
1.841976e-02
Ear size
392.59815
20
7.001138e-71
1.470239e-69
Hindquarter proportions
21.07438
20
0.3927663
3.927663e-01
Locomotion
61.62364
20
3.981408e-06
8.360957e-06
Loin strength
36.81349
20
0.01231924
1.437245e-02
Muscularity
59.49774
20
8.515152e-06
1.490152e-05
PTA type
47.19981
20
0.0005502703
7.703784e-04
Presence of horns
93.85986
20
1.555232e-11
4.665696e-11
Rump angle
134.5311
20
5.477569e-19
2.875724e-18
Rump conformation
83.11887
20
1.152938e-09
3.026462e-09
Stature
59.71856
20
7.872337e-06
1.490152e-05
Strength
50.00192
20
0.0002213365
3.320047e-04
Structural soundness
57.53883
20
1.699908e-05
2.746005e-05
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
30
χ2
=
24147.480210
Number of traits:
21
df
=
580
Number of QTLs:
3,841
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
