| QTL Map Information |
|---|
| Chromosome: | 27 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
|
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs109458480 |
| Peak: | |
| Lower, "Significant": | rs135325046 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
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VARIANCE | 1.14% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Nellore bulls. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina BovineHD BeadChip, or medium-density chips with data imputed to HD, and GWAS was performed for testicular hypoplasia. A total of 461,057 SNPs were used for analysis. |
| Analysis: | The wssGBLUP method and a single-trait threshold animal model were used. |
| Software: | QCF90, FImpute V3, PREGSF90, THRGIBBS1F90, POSTGSF90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Silva TL, Gondro C, Fonseca PAS, da Silva DA, Vargas G, Neves HHR, Filho IC, Teixeira CS, Albuquerque LG, Carvalheiro R |
| Affiliation: | Department of Animal Science, Sao Paulo State University, School of Agriculture and Veterinarian Sciences, Jaboticabal, Brazil |
| Title: | Testicular hypoplasia in Nellore Cattle: Genetic analysis and functional analysis of genome-wide association study results |
| Journal: | Journal of animal breeding and genetics, 2023, 140(2):185-197 |
| Links: |
PubMed | Abstract | List all data
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