Release 56
(Apr 24, 2025)

QTL 57487 Description:

 Trait Information
Trait name: Subcutaneous fat thickness Vertebrate Trait Ontology: Subcutaneous adipose thickness
Trait details: fat depth between the 12th and 13th ribs Product Trait Ontology: n/a
Symbol: SUBFAT Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:14
QTL Peak Location:39.31 (cM)
QTL Span:39.31-39.31 (cM)
28.4-28.4 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs29011751
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:Experiment-wise
Threshold significance level:Significant
P_values0.023
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Brahman heifers.
     Breeds associated:
    Design:Animals were genotyped using the Affymetrix bovine 10k SNP array and analyzed for growth and ultrasound fat/muscle traits. A total of 6714 SNPs were used for analysis.
    Analysis:A linear mixed model was used.
    Software:ASReml
    Notes:Only single-SNP associations (not epistatic interaction data) were entered, due to database restrictions at time of curation.
    Links:Edit

     Reference
    Authors:Ali A A, Khatkar M S, Kadarmideen H N, Thomson P C
    Affiliation:Faculty of Veterinary Science, University of Sydney, Camden, NSW, Australia
    Title:Additive and epistatic genome-wide association for growth and ultrasound scan measures of carcass-related traits in Brahman cattle
    Journal:Journal of animal breeding and genetics, 2015, 132(2): 187-97
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:dry season
    User inputs on reference #25754883
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  • Cite this Data:

    Animal QTLdb: QTL57487 was published in 2015, and was curated into QTLdb on 2015-08-20. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:57487

     

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