| QTL Map Information |
|---|
| Chromosome: | 17 |
| QTL Peak Location: | 86.78 (cM) |
| QTL Span: | 86.78-86.78 (cM)
63.7-63.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs475678587 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | UBE3B (ubiquitin protein ligase E3B) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Finnish Ayrshire cattle. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumna BovineHD BeadChip and analyzed for association of sliding SNP windows with PIRM syndrome. A total of 623,881 SNPs were used for analysis. |
| Analysis: | Fisher's exact test was used. |
| Software: | PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Venhoranta H, Pausch H, Flisikowski K, Wurmser C, Taponen J, Rautala H, Kind A, Schnieke A, Fries R, Lohi H, Andersson M |
| Affiliation: | Department of Production Animal Medicine, Faculty of Veterinary Medicine, University of Helsinki, Paroninkuja 20, 04920 Saarentaus, Finland |
| Title: | In frame exon skipping in UBE3B is associated with developmental disorders and increased mortality in cattle |
| Journal: | BMC genomics, 2014, 15: 890 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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