| QTL Map Information |
|---|
| Chromosome: | 11 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
59.1-59.1 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs268248104 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Saanen goats. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina GoatSNP50 BeadChip, and GWAS were performed for incidence of the "pink" and "pink-necked" phenotypes. A total of 49,574 SNPs were used for analysis. |
| Analysis: | A mixed model and restricted maximum likelihood methods were used. |
| Software: | SAS v9.2, ASReml 3.0, PHASEBOOK, Beagle |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Martin PM, Palhière I, Ricard A, Tosser-Klopp G, Rupp R |
| Affiliation: | INRA, UMR 1388 Génétique, Physiologie et Systèmes d'Elevage, Castanet-Tolosan, France |
| Title: | Genome Wide Association Study Identifies New Loci Associated with Undesired Coat Color Phenotypes in Saanen Goats |
| Journal: | PLoS One, 2016, 11: e0152426 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | SNP method |
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