| QTL Map Information |
|---|
| Chromosome: | 21 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
0.2-0.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs316267959 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Chromosome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #171297
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Birds were Chinese Dongxiang blue-shelled chickens. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped using the Affymetrix 600K Axiom Chicken Genotyping Array and analyzed for eggshell color traits. A total of 348,093 SNPs were used for analysis. |
| Analysis: | Least-squares regression tests were used for initial GWAS. Replication association studies and haplotype association analysis were carried out using the general linear model procedure. |
| Software: | PLINK, Haploview, SAS |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Darwish HYA, Dalirsefat SB, Dong X, Hua G, Chen J, Zhang Y, Li J, Xu J, Li J, Deng X, Wu C |
| Affiliation: | National Engineering Laboratory for Animal Breeding and Key Laboratory of Animal Genetics, Breeding, and Reproduction of the Ministry of Agriculture, China Agricultural University, Beijing, China |
| Title: | Genome-wide association study and a post replication analysis revealed a promising genomic region and candidate genes for chicken eggshell blueness |
| Journal: | PloS one, 2019, 14(1): e0209181 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #30673708
Add your comments
Note similar findings
Note contradictions
|
