| QTL Map Information |
|---|
| Chromosome: | 5 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
49.8-49.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs317601331 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.09E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Chickens were from pure lines of Rhode Island Red, Dwarf Chicken, and Beijing You. |
| Breeds associated:
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| Design: | Birds were genotyped using the Affymetrix 600K chicken high-density array and analyzed for traits related to Salmonella pullorum infection resistance. A total of 302,927 SNPs were used for analysis. |
| Analysis: | A single-marker univariate linear mixed model was used. |
| Software: | PLINK, Beagle, GenABEL in R, GCTA, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Li X, Nie C, Liu Y, Chen Y, Lv X, Wang L, Zhang J, Li K, Jia Y, Ban L, Ning Z, Qu L |
| Affiliation: | State Key Laboratory of Animal Nutrition, Department of Animal Genetics and Breeding, National Engineering Laboratory for Animal Breeding, College of Animal Science and Technology, China Agricultural University, Beijing, China |
| Title: | A genome-wide association study explores the genetic determinism of host resistance to Salmonella pullorum infection in chickens |
| Journal: | Genetics, Selection, Evolution : GSE, 2019, 51(1): 51 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | carrier state |
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