| QTL Map Information |
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| Chromosome: | 17 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
4.9-4.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs15032016 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
FDR | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Birds were from an F2 population generated from half-sib families descended from reciprocal crosses between a fast-growing Arian broiler line and a slow-growing Iranian indigenous chicken breed, Urmia. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped using the Illumina chicken 60K Beadchip, and association analyses were performed for plumage color. A total of 42,731 SNPs were used for analysis. |
| Analysis: | Additive and epistatic association analyses were performed. In the additive association study, two scenarios including all 42,731 SNPs and 5170 independent SNP markers derived from the LD-pruning approach were performed separately. In the epistasis model, only the 5170 independent SNP markers derived from the LD-pruning approach were used. |
| Software: | PLINK 1.9 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Davoodi P, Ehsani A, Vaez Torshizi R, Masoudi A A |
| Affiliation: | Department of Animal Science, Faculty of Agriculture, Tarbiat Modares University, 14115-336, Tehran, Iran |
| Title: | New insights into genetics underlying of plumage color |
| Journal: | Animal Genetics, 2022, 53(1): 80-93 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | additive GWAS using independent SNPs |
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