| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | n/a
26.0-26.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs14801862 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Experiment-wise |
| Threshold significance level: | Significant |
 |
P_values | 3.74E-2 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | A total of 79 chickens representing 34 traditional breeds, together with 17, 24, and 10 village chickens from Kenya, Ethiopia and Chile, respectively, were studied. |
| Breeds associated:
n/a
|
| Design: | Birds were genotyped using the 60K SNP Illumina iSelect chicken array and analyzed for comb morphology and skin and egg color phenotypes. A total of 53,493 SNPs were used for analysis. |
| Analysis: | Tests of allelic association were performed using the qtscore function of GenABEL. |
| Software: | GenABEL in R, PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Wragg D, Mwacharo JM, Alcalde JA, Hocking PM, Hanotte O |
| Affiliation: | Centre for Genetics and Genomics, School of Biology, University of Nottingham, University Park, Nottingham, UK |
| Title: | Analysis of genome-wide structure, diversity and fine mapping of Mendelian traits in traditional and village chickens |
| Journal: | Heredity (Edinb), 2012, 109(1):6-18 |
| Links: |
PubMed | Abstract | List all data
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