Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of fleece traits:
7
Number of QTL / associations found:
439
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are fleece traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
100.24532
26
1.168362e-10
6.309155e-10
Chromosome 1
93.54828
26
1.481614e-09
6.667263e-09
Chromosome 2
167.77383
26
1.092540e-22
7.374645e-22
Chromosome 3
25.79661
26
0.4743275
7.533437e-01
Chromosome 4
0.02891
26
0.998329325823115
9.999990e-01
Chromosome 5
81.28631
26
1.326191e-07
3.978573e-07
Chromosome 6
3.23393
26
0.998329325823115
9.999990e-01
Chromosome 7
11.90819
26
0.9916779
9.999990e-01
Chromosome 8
185.20208
26
5.786664e-26
5.207998e-25
Chromosome 9
0.68271
26
0.998329325823115
9.999990e-01
Chromosome 10
11.90819
26
0.9916779
9.999990e-01
Chromosome 11
2.19751
26
0.998329325823115
9.999990e-01
Chromosome 12
549.95150
26
1.548991e-99
4.182276e-98
Chromosome 13
461.50272
26
3.06505e-81
4.137818e-80
Chromosome 14
87.53689
26
1.379179e-08
4.654729e-08
Chromosome 15
16.86720
26
0.91304
9.999990e-01
Chromosome 16
64.70317
26
3.790531e-05
8.528695e-05
Chromosome 17
16.86720
26
0.91304
9.999990e-01
Chromosome 18
9.67589
26
0.998478
9.999990e-01
Chromosome 19
75.68953
26
9.518964e-07
2.336473e-06
Chromosome 20
36.91051
26
0.07615161
1.285058e-01
Chromosome 21
54.57788
26
0.000858011
1.782023e-03
Chromosome 22
36.91051
26
0.07615161
1.285058e-01
Chromosome 23
45.31366
26
0.01087197
2.096737e-02
Chromosome 24
87.53689
26
1.379179e-08
4.654729e-08
Chromosome 25
4.57338
26
0.999999
9.999990e-01
Chromosome 26
75.68953
26
9.518964e-07
2.336473e-06
Chi-squared (χ2) test: Which of the 7 fleece traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Clean fleece weight
88.58109
6
5.971143e-17
2.089900e-16
Face wool score
58.98844
6
7.222621e-11
1.011167e-10
Fleece yield
86.10985
6
1.943866e-16
4.535687e-16
Greasy fleece weight
40.1801
6
4.198582e-07
4.198582e-07
Staple length
48.80652
6
8.151175e-09
9.509704e-09
Staple strength
72.10859
6
1.509322e-13
2.641313e-13
Wool crimp
110.1048
6
1.937952e-21
1.356566e-20
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
2308.118330
Number of traits:
7
df
=
156
Number of QTLs:
439
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
