Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of conformation traits:
13
Number of QTL / associations found:
126
Number of chromosomes where QTL / associations are found:
24
Chi-squared (χ2) test: are conformation traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
3.86906
23
0.9999975
9.999975e-01
Chromosome 1
189.58329
23
3.659586e-28
8.783006e-27
Chromosome 2
55.86906
23
0.0001476277
8.857662e-04
Chromosome 3
112.82141
23
7.985603e-14
6.388482e-13
Chromosome 4
12.53577
23
0.9613496
9.999975e-01
Chromosome 5
3.86906
23
0.9999975
9.999975e-01
Chromosome 6
148.72624
23
2.204274e-20
2.645129e-19
Chromosome 7
12.53577
23
0.9613496
9.999975e-01
Chromosome 8
44.72624
23
0.004293079
1.471913e-02
Chromosome 9
1.39282
23
0.998329325823115
9.999975e-01
Chromosome 10
7.58329
23
0.9989402
9.999975e-01
Chromosome 11
12.53577
23
0.9613496
9.999975e-01
Chromosome 12
26.15470
23
0.2936176
5.872352e-01
Chromosome 13
7.58329
23
0.9989402
9.999975e-01
Chromosome 15
26.15470
23
0.2936176
5.872352e-01
Chromosome 16
12.53577
23
0.9613496
9.999975e-01
Chromosome 17
44.72624
23
0.004293079
1.471913e-02
Chromosome 18
26.15470
23
0.2936176
5.872352e-01
Chromosome 19
44.72624
23
0.004293079
1.471913e-02
Chromosome 20
26.15470
23
0.2936176
5.872352e-01
Chromosome 21
0.15470
23
0.998329325823115
9.999975e-01
Chromosome 23
1.39282
23
0.998329325823115
9.999975e-01
Chromosome 24
1.39282
23
0.998329325823115
9.999975e-01
Chromosome 26
34.82141
23
0.05417732
1.625320e-01
Chi-squared (χ2) test: Which of the 13 conformation traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Body condition score
27.20618
12
0.00721588
1.172581e-02
Body wrinkle
62.00002
12
9.726085e-09
6.321955e-08
Chest width
37.79166
12
0.0001660776
4.318018e-04
Conformation score
11.60002
12
0.478313
4.783130e-01
Ear posture
19.00002
12
0.08852797
1.046240e-01
Ear size
39.7249
12
7.987256e-05
2.595858e-04
Foot angle
35.50003
12
0.0003896859
8.443194e-04
Lumbar vertebra number
56.50003
12
9.728379e-08
4.215631e-07
Rear leg placement - rear view
32.75
12
0.001058868
1.966469e-03
Rear leg placement - side view
23.20002
12
0.02607504
3.766395e-02
Rump width
16.77144
12
0.1583991
1.715990e-01
Stature
20.75002
12
0.05416305
7.041196e-02
Thoracic vertebra number
82.00002
12
1.712244e-12
2.225917e-11
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
24
χ2
=
857.999870
Number of traits:
13
df
=
276
Number of QTLs:
126
p-value
=
6.318755e-61
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
