Release 56
(Apr 24, 2025)

QTL 178756 Description:

 Trait Information
Trait name: Fecal egg count Vertebrate Trait Ontology: Response to parasitic infection trait
Reported name: (n/a) Product Trait Ontology: n/a
Symbol: FECGEN Clinical Measurement Ontology: Fecal parasite egg count
 QTL Map Information
Chromosome:2
QTL Peak Location:136.03 (cM)
QTL Span:135.43-136.62 (cM)
107.0-107.9 (Mbp)
Upper, "Suggestive":rs412280302
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":rs425481333
Marker type:SNP
Analysis type:QTL
Model tested:Mendelian
Test base:Experiment-wise
Threshold significance level:Suggestive
LikelihoodR13.13
FDR0.051
Dominance effect:n/a
Additive effect:n/a
Associated Gene:n/a
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Sheep were from a large, multi-breed population (70% Merino genes) from the information nucleus flock of the Australian Sheep Cooperative Research Centre.
     Breeds associated:
    n/a
    Design:Animals were genotyped using the Illumina OvineSNP50 BeadChip, with data imputed to the 600K Ovine Infinium HD BeadChip, and analyzed for worm egg count in feces.
    Analysis:Single-SNP regression analysis was performed using a linear mixed model.
    Software:Minimac 3, GEMMA, FImpute, Haploview
    Notes: 
    Links:Edit

     Reference
    Authors:Al Kalaldeh M, Gibson J, Lee SH, Gondro C, van der Werf JHJ
    Affiliation:School of Environmental and Rural Science, University of New England, Armidale, NSW, 2351, Australia
    Title:Detection of genomic regions underlying resistance to gastrointestinal parasites in Australian sheep
    Journal:Genetics, Selection, Evolution : GSE, 2019, 51(1): 37
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:200-SNP window
    User inputs on reference #31269896
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  • Cite this Data:

    Animal QTLdb: QTL178756 was published in 2019, and was curated into QTLdb on 2019-09-17. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:178756

     

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