Release 55
(Dec 23, 2024)

Whole genome analysis for QTL/association enrichment

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Version: Enrich S: beta v0.8
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Data:

Number of meat/fat color traits:2
Number of QTL / associations found:4,861
Number of chromosomes where QTL / associations are found:19

Chi-squared (χ2) test: are meat/fat color traits over-represented on some chromosomes?

Chromosomes Total χ2 df p-values FDR * Size of χ2
Chromosome X461.00534181.603691e-861.523506e-85
Chromosome 14600.73790189e-411.315385e-40
Chromosome 220.45894180.30758283.437690e-01
Chromosome 3258.49186181.522431e-442.629654e-44
Chromosome 43.17650180.9999579.999570e-01
Chromosome 5331.22752181.751754e-595.547221e-59
Chromosome 6127.76320181.416113e-181.681634e-18
Chromosome 7309.08268186.50595e-551.545163e-54
Chromosome 8370.97242181.010120e-673.838456e-67
Chromosome 9230.84324186.261876e-398.498260e-39
Chromosome 10457.21640189.984666e-866.323622e-85
Chromosome 11318.47952187.519315e-572.040957e-56
Chromosome 12293.73400189.34315e-521.775199e-51
Chromosome 13182.61818182.903298e-293.677511e-29
Chromosome 14305.98168182.830657e-545.975831e-54
Chromosome 1515.02590180.6601886.968651e-01
Chromosome 1631556.30260189e-411.315385e-40
Chromosome 17384.72104181.395216e-706.627276e-70
Chromosome 18476.31742189.844002e-901.870360e-88

Chi-squared (χ2) test: Which of the 2 meat/fat color traits are over-represented in the QTLdb

Traits Total χ2 df p-values FDR * Size of χ2
Fat color 14.83386 1 0.0001174085 0.000234817
Meat color 0.00303 1 0.9561023 0.956102300

Correlations found between some of these traits for your reference

No correlation data found on these traits

Overall Test

Data Chi'Square Test Fisher's Exact Test
Number of chrom.:19 χ2=40704.156340
Number of traits:2 df=18
Number of QTLs:4,861 p-value=0

FOOT NOTE: * : FDR is short for "false discovery rate", representing the expected proportion of type I errors. A type I error is where you incorrectly reject the null hypothesis, i.e. you get a false positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where V = Number of Type I errors (false positives); R = Number of rejected hypotheses. Benjamini–Hochberg procedure is a practical way to estimate FDR.

 

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