Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of conformation traits:
31
Number of QTL / associations found:
1,377
Number of chromosomes where QTL / associations are found:
19
Chi-squared (χ2) test: are conformation traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
1269.27237
18
1.589225e-258
3.019528e-257
Chromosome 1
602.35604
18
2.733791e-116
1.298551e-115
Chromosome 2
130.60207
18
4.071e-19
5.524929e-19
Chromosome 3
322.86066
18
9.375347e-58
1.979240e-57
Chromosome 4
56.31026
18
7.961083e-06
8.403365e-06
Chromosome 5
372.90644
18
4.002872e-68
1.086494e-67
Chromosome 6
103.11406
18
5.933929e-14
7.046541e-14
Chromosome 7
15690.55359
18
9e-41
1.425000e-40
Chromosome 8
277.56501
18
1.933154e-48
3.339084e-48
Chromosome 9
90.25929
18
1.297166e-11
1.449774e-11
Chromosome 10
666.49473
18
7.238388e-130
4.584312e-129
Chromosome 11
451.07046
18
1.936871e-84
7.360110e-84
Chromosome 12
277.56501
18
1.933154e-48
3.339084e-48
Chromosome 13
322.86066
18
9.375347e-58
1.979240e-57
Chromosome 14
116.82443
18
1.663671e-16
2.107317e-16
Chromosome 15
700.69145
18
4.048008e-137
3.845608e-136
Chromosome 16
31.09610
18
0.02805904
2.805904e-02
Chromosome 17
423.71761
18
1.024179e-78
3.243233e-78
Chromosome 18
163.08790
18
2.068937e-25
3.023831e-25
Chi-squared (χ2) test: Which of the 31 conformation traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Body condition score
39.83588
30
0.1080823
2.094095e-01
Cannon bone circumference
267.7607
30
5.466178e-40
8.472576e-39
Cervical vertebra length
85.34235
30
3.278060e-07
1.451712e-06
Conformation score
31.46893
30
0.3926246
6.210593e-01
Ear area
380.93008
30
1.959085e-62
6.073163e-61
Ear erectness
25.06757
30
0.7217415
8.402467e-01
Ear size
19.35458
30
0.9322702
9.633459e-01
Ear weight
30.89226
30
0.4207176
6.210593e-01
Facial morphology
54.80681
30
0.003732918
8.901574e-03
Feet and leg conformation
51.70911
30
0.008185278
1.812454e-02
Femur dimensions
32.58535
30
0.3408162
5.869612e-01
Front feet conformation
31.08758
30
0.4111106
6.210593e-01
Front foot size
20.28992
30
0.9087731
9.633459e-01
Front leg conformation
55.7524
30
0.002914736
7.529735e-03
Gait score (front)
13.56353
30
0.9956707
9.956707e-01
Gait score (hind)
20.13815
30
0.9128946
9.633459e-01
Gait score (overall)
66.21928
30
0.0001528285
5.264093e-04
Hind feet conformation
34.84409
30
0.2483577
4.528876e-01
Hind foot size
24.85956
30
0.7318278
8.402467e-01
Hind leg conformation
131.16657
30
1.301206e-14
1.008435e-13
Hip structure
87.85864
30
1.381584e-07
7.138184e-07
Leg conformation (overall)
29.59998
30
0.4862705
6.554081e-01
Lumbar vertebra length
25.1262
30
0.7188759
8.402467e-01
Lumbar vertebra number
102.44582
30
7.600414e-10
4.712257e-09
Rib shape
29.63419
30
0.4844978
6.554081e-01
Thoracic vertebra length
59.62639
30
0.001021519
3.166709e-03
Thoracic vertebra number
167.58157
30
4.706044e-21
4.862912e-20
Thoracolumbar vertebra number
44.87703
30
0.03963057
8.190318e-02
Top line conformation
57.95745
30
0.001615498
4.552767e-03
Vertebra distance
28.29785
30
0.5546564
7.164312e-01
Vertebra number
75.39249
30
8.883228e-06
3.442251e-05
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
19
χ2
=
22069.208140
Number of traits:
31
df
=
540
Number of QTLs:
1,377
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
