Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
35
Number of QTL / associations found:
4,503
Number of chromosomes where QTL / associations are found:
19
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
6145.82290
18
9e-41
1.315385e-40
Chromosome 1
12939.07160
18
9e-41
1.315385e-40
Chromosome 2
180.90730
18
6.339948e-29
8.030601e-29
Chromosome 3
7343.94500
18
9e-41
1.315385e-40
Chromosome 4
2853.31235
18
9e-41
1.315385e-40
Chromosome 5
9.45140
18
0.9483512
9.483512e-01
Chromosome 6
224.62020
18
1.132278e-37
1.536663e-37
Chromosome 7
11249.62020
18
9e-41
1.315385e-40
Chromosome 8
85.06330
18
1.098228e-10
1.227431e-10
Chromosome 9
1249.95780
18
2.198369e-254
4.176901e-253
Chromosome 10
2457.53165
18
9e-41
1.315385e-40
Chromosome 11
53.31235
18
2.347109e-05
2.477504e-05
Chromosome 12
992.99585
18
2.200646e-199
2.090614e-198
Chromosome 13
549.51470
18
3.919742e-105
1.489502e-104
Chromosome 14
141.91975
18
2.730254e-21
3.242177e-21
Chromosome 15
744.45140
18
2.064299e-146
9.805420e-146
Chromosome 16
2056.28675
18
9e-41
1.315385e-40
Chromosome 17
968.92390
18
3.05226e-194
1.933098e-193
Chromosome 18
2894.51470
18
9e-41
1.315385e-40
Chi-squared (χ2) test: Which of the 35 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at slaughter
46.65444
34
0.07271347
1.339459e-01
Average daily gain
187.38864
34
4.131186e-23
2.065593e-22
Average daily ham weight gain
10.97604
34
0.9999384
9.999992e-01
Average daily lean meat gain
40.69443
34
0.1994352
3.323920e-01
Average daily loin weight gain
10.97604
34
0.9999384
9.999992e-01
Body circumference
711.63676
34
9.749833e-128
1.706221e-126
Body depth
38.30705
34
0.2803203
4.459641e-01
Body height
422.74226
34
1.308582e-68
1.526679e-67
Body length
1287.37634
34
1.199175e-248
4.197113e-247
Body mass index
96.57333
34
6.587144e-08
2.095909e-07
Body weight
109.68307
34
6.812154e-10
2.384254e-09
Body weight linear
7.77776
34
0.9999992
9.999992e-01
Body width
26.22319
34
0.8273684
9.999992e-01
Bone mineral content
45.55964
34
0.08892443
1.556178e-01
Bone mineral density
49.88451
34
0.0386494
7.515161e-02
Chest width
54.07267
34
0.01575078
3.242808e-02
Days to 100 kg
130.97158
34
2.609714e-13
1.014889e-12
Days to 105 kg
66.94766
34
0.0006320468
1.580117e-03
Days to 110 kg
69.62326
34
0.0003015269
8.118032e-04
Days to 113 kg
15.3152
34
0.9975845
9.999992e-01
Days to 115 kg
27.67634
34
0.7697598
9.999992e-01
Days to 30 kg
23.35946
34
0.9151707
9.999992e-01
Days to 90 kg
29.64666
34
0.6809837
9.931012e-01
Femur bone mineral density
14.31601
34
0.9987884
9.999992e-01
Femur length
194.09882
34
2.514547e-24
1.466819e-23
Hip bone length
93.33334
34
1.959033e-07
5.713846e-07
Humerus length
227.91423
34
1.449759e-30
1.014831e-29
Lipid accretion rate
66.45404
34
0.000722775
1.686475e-03
Loin eye area linear
27.19936
34
0.789523
9.999992e-01
Physis score
8.17481
34
0.9999985
9.999992e-01
Protein accretion rate
19.33079
34
0.9795176
9.999992e-01
Rump width
35.87075
34
0.3807834
5.794530e-01
Scapula length
64.95259
34
0.001081707
2.366234e-03
Tibia length
261.56149
34
6.351601e-37
5.557651e-36
Ulna length
172.44285
34
1.956679e-20
8.560471e-20
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
19
χ2
=
53141.223100
Number of traits:
35
df
=
612
Number of QTLs:
4,503
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
