| QTL Map Information |
|---|
| Chromosome: | 16 |
| QTL Peak Location: | 33.89 (cM) |
| QTL Span: | 33.89-33.89 (cM)
29.3-29.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81226988 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 5.01187E-08 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #101669
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were from five pig populations: White Duroc x Erhualian F2, Duroc x (Landrace x Yorkshire) hybrid, Sutai, Erhualian, and Laiwu. |
| Breeds associated:
|
| Design: | Animals were genotyped using either the Illumina PorcineSNP60 BeadChip v2 or BeadChip v1 and analyzed for fatty acid traits. Meta-analysis across the populations was conducted using a common set of 28,124 SNPs. |
| Analysis: | For GWAS, a generalized linear mixed model was used. Meta-analysis was performed using a Z-score method. |
| Software: | GenABEL in R, METAL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Zhang W, Bin Yang, Zhang J, Cui L, Ma J, Chen C, Ai H, Xiao S, Ren J, Huang L |
| Affiliation: | State Key Laboratory of Pig Genetic Improvement and Production Technology, Jiangxi Agricultural University, Nanchang, 330045, P.R. China |
| Title: | Genome-wide association studies for fatty acid metabolic traits in five divergent pig populations |
| Journal: | Scientific reports, 2016, 6: 24718 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #27097669
Add your comments
Note similar findings
Note contradictions
|
