| QTL Map Information |
|---|
| Chromosome: | 8 |
| QTL Peak Location: | 39.33 (cM) |
| QTL Span: | 39.33-39.33 (cM)
41.3-41.3 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81228710 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.92E-5 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were Chinese Erhualian pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for incidence of enzoontic pneumonia-like disease symptoms. A total of 33,856 SNPs were used for analysis. |
| Analysis: | A linear mixed model and a genome-wide case-control study under a dominant model were used. |
| Software: | GenABEL, MCMCGLMM, and SNPRELATE in R; PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Huang X, Huang T, Deng W, Yan G, Qiu H, Huang Y, Ke S, Hou Y, Zhang Y, Zhang Z, Fang S, Zhou L, Yang B, Ren J, Ai H, Huang L |
| Affiliation: | State Key Laboratory for Pig Genetic Improvement and Production Technology, Jiangxi Agricultural University, Nanchang, 330045, China |
| Title: | Genome-wide association studies identify susceptibility loci affecting respiratory disease in Chinese Erhualian pigs under natural conditions |
| Journal: | Animal genetics, 2017, 48(1):30-37 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | enzoonotic pneumonia-like score; case-control dominant model |
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