| QTL Map Information |
|---|
| Chromosome: | 14 |
| QTL Peak Location: | 85.98 (cM) |
| QTL Span: | 85.98-85.98 (cM)
111.7-111.7 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs339004749 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #133069
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Duroc and Landrace boars. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Affymetrix Axiom porcine 660K array and analyzed for fatty acid composition of backfat. For a region of interest on SSC14, data were imputed to sequence level and re-analyzed. |
| Analysis: | For each trait, a test was run using the polygenic function, which combines the family-based score test for association with a kinship matrix of relatedness estimated from genotyped SNPs using the identity-by-state function. |
| Software: | FImpute, GenABEL in R, ASReml, SAMtools, Beagle |
| Notes: | |
| Reference |
|---|
| Authors: | van Son M, Enger EG, Grove H, Ros-Freixedes R, Kent MP, Lien S, Grindflek E |
| Affiliation: | Norsvin SA, Storhamargata 44, , 2317, Hamar, Norway |
| Title: | Genome-wide association study confirm major QTL for backfat fatty acid composition on SSC14 in Duroc pigs |
| Journal: | BMC genomics, 2017, 18(1):369 |
| Links: |
PubMed | Abstract | List all data
|
User inputs on reference #28494783
Add your comments
Note similar findings
Note contradictions
|
