Release 56
(Apr 24, 2025)

QTL 153862 Description:

 Trait Information
Trait name: Meat color Vertebrate Trait Ontology: n/a
Trait details: meat color redness (a*) Product Trait Ontology: Meat color
Symbol: MCOL Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:1
QTL Peak Location:91.43 (cM)
QTL Span:91.43-91.43 (cM)
189.6-189.6 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs319868732
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values<0.05
Dominance effect:-0.541
Additive effect:0.237
Associated Gene:SIX1 (SIX homeobox 1 )
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

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  •  QTL Experiment in Brief
    Animals:Animals were Pietrain × Duroc × Landrace × Yorkshire commercial pigs.
     Breeds associated:
    Design:Animals were genotyped for 12 variants in the Six1 promoter region and analyzed for production traits.
    Analysis:The mixed linear model and a least-squares method were used.
    Software:GATK, SAS, SPSS
    Notes: 
    Links:Edit

     Reference
    Authors:Wu W J, Liu K Q, Li B J, Dong C, Zhang Z K, Li P H, Huang R H, Wei W, Chen J, Liu H L
    Affiliation:Department of Animal Genetics, Breeding and Reproduction, College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, China
    Title:Identification of an (AC)n microsatellite in the Six1 gene promoter and its effect on production traits in Pietrain × Duroc × Landrace × Yorkshire pigs
    Journal:Journal of animal science, 2018, 96(1): 17-26
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #29432614
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  • Cite this Data:

    Animal QTLdb: QTL153862 was published in 2018, and was curated into QTLdb on 2018-04-02. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:153862

     

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