Release 56
(Apr 24, 2025)

QTL 160590 Description:

 Trait Information
Trait name: Salmonella shedding status Vertebrate Trait Ontology: Response to bacterial infection trait
Reported name: (n/a) Product Trait Ontology: n/a
Symbol: SSHED Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:14
QTL Peak Location:58.15 (cM)
QTL Span:58.15-58.15 (cM)
82.1-82.1 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:rs320692131
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:SNP
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values0.010
Dominance effect:n/a
Additive effect:n/a
Associated Gene:MBL1 (mannan-binding lectin (A))
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #160590
  • Add your annotations
  • Add your comments
  • Report problems
  •  QTL Experiment in Brief
    Animals:Animals were 14 groups of pigs from Southwestern Ontario, Canada.
     Breeds associated:
    n/a
    Design:Pigs were genotyped for 27 selected variants in 15 genes and analyzed for salmonella shedding status and colonization.
    Analysis:A mixed-effects multivariable logistic regression model was used.
    Software: 
    Notes: 
    Links:Edit

     Reference
    Authors:Ainslie-Garcia Margaret H, Farzan Abdolvahab, Jafarikia Mohsen, Lillie Brandon N
    Affiliation:Department of Pathobiology, University of Guelph, 50 Stone Road East, Guelph, ON, N1G 2W1, Canada
    Title:Single nucleotide variants in innate immune genes associated with Salmonella shedding and colonization in swine on commercial farms
    Journal:Veterinary microbiology, 2018, 219: 171-177
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  
    User inputs on reference #29778193
  • Add your comments
  • Note similar findings
  • Note contradictions
  • Cite this Data:

    Animal QTLdb: QTL160590 was published in 2018, and was curated into QTLdb on 2018-07-26. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:160590

     

    © 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team