| QTL Map Information |
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| Chromosome: | 15 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
120.9-120.9 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs1109104772 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
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P_values | 3.61E-6 | | Dominance effect: | n/a |
| Additive effect: | 0.10 |
| Associated Gene: | PRKAG3 (protein kinase, AMP-activated, gamma 3 non-catalytic subunit) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
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| Animals: | Animals were Duroc x (Landrace x Yorkshire) pigs. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 Beadchip and analyzed for muscle glycogen and lactate and other meat quality traits. A total of 39,369 SNPs were used for GWAS. In an attempt to identify causative variants, further genotyping and analyses were carried out for SNPs in the PRKAG3 and PHKG1 genes. |
| Analysis: | A general linear mixed model was used. |
| Software: | PLINK, GenABEL v1.7 |
| Notes: | |
| Links: | Edit |
| Reference |
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| Authors: | Liu X, Zhou L, Xie X, Wu Z, Xiong X, Zhang Z, Yang J, Xiao S, Zhou M, Ma J, Huang L |
| Affiliation: | State Key Laboratory for Swine Genetics, Breeding and Production Technology, Jiangxi Agricultural University, Nanchang, 330045, China.. |
| Title: | Muscle glycogen level and occurrence of acid meat in commercial hybrid pigs are regulated by two low-frequency causal variants with large effects and multiple common variants with small effects. |
| Journal: | Genetics, Selection, Evolution : GSE, 2019, 51(1): 46 |
| Links: |
PubMed | Abstract | List all data
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