| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 0.00-0.00 (cM)
103.4-103.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #214209
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Duroc pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped by sequencing and analyzed for total teat number. A toal of 41,108 SNPs were used for analysis. |
| Analysis: | A t-test of additive and dominance SNP effects using a generalized least-squares analysis and least-squares analyses of additive effects were used for GWAS. |
| Software: | Tassel 5.0, Beagle 4.0, EPISNP2, PLINK, EPISNP1 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Tan C, Wu Z, Ren J, Huang Z, Liu D, He X, Prakapenka D, Zhang R, Li N, Da Y, Hu X |
| Affiliation: | State Key Laboratory for Agrobiotechnology, China Agricultural University, Beijing, 100193, China |
| Title: | Genome-wide association study and accuracy of genomic prediction for teat number in Duroc pigs using genotyping-by-sequencing |
| Journal: | Genetics, Selection, Evolution : GSE, 2017, 49(1): 35 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | EPISNP2 & PLINK methods |
User inputs on reference #28356075
Add your comments
Note similar findings
Note contradictions
|
