| QTL Map Information |
|---|
| Chromosome: | X |
| QTL Peak Location: | 380.24 (cM) |
| QTL Span: | 380.24-380.24 (cM)
91.9-91.9 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81473443 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.01 | | Dominance effect: | n/a |
| Additive effect: | 3.18 |
| Associated Gene: | TRPC5 (transient receptor potential cation channel, subfamily C, member 5) |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #21969
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were White Duroc x Erhualian or Sutai pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for leg and gait traits. Following quality control, 38066 SNP remained for final analyses. |
| Analysis: | GWAS using an additive model was performed using the family-based score test for association. |
| Software: | GenABEL in R, CRIMAP |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Guo Y M, Zhang X F, Ren J, Ai H S, Ma J W, Huang L S |
| Affiliation: | Key Laboratory for Animal Biotechnology of Jiangxi Province and Ministry of Agriculture of China, Jiangxi Agricultural University, Nanchang 330045, China. |
| Title: | A joint genomewide association analysis of pig leg weakness and its related traits in an F2 population and a Sutai population. |
| Journal: | Journal of animal science, 2013, 91 (9): 4060-8 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #23825321
Add your comments
Note similar findings
Note contradictions
|
