| QTL Map Information |
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| Chromosome: | 5 |
| QTL Peak Location: | 0.00 (cM) |
| QTL Span: | 0.00-0.00 (cM)
30.2-30.2 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs344114415 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | 9.19E-46 | | Dominance effect: | n/a |
| Additive effect: | -32.84 |
| Associated Gene: | HMGA2 (high mobility group AT-hook 2) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were from a White Duroc x Erhualian resource population or from synthetic commercial lines including Sutai (Duroc x Erhualian), Sujiang (Duroc x Jiangquhai), and Suzhong (Landrace x Erhualian). |
| Breeds associated:
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| Design: | Animals were genotyped for four microsatellite markers in a QTL region and analyzed for ear size. Candidate genes were identified and animals were genotyped for seven SNP within these genes. |
| Analysis: | QTL analysis was performed using regression interval mapping. |
| Software: | CRIMAP, QTL Express, GridQTL, Qxpak, SAS, R |
| Notes: | |
| Links: | Edit |
| Reference |
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| Authors: | Li P, Xiao S, Wei N, Zhang Z, Huang R, Gu Y, Guo Y, Ren J, Huang L, Chen C |
| Affiliation: | Key Laboratory for Animal Biotechnology of Jiangxi Province and the Ministry of Agriculture of China, Jiangxi Agricultural University, Nanchang 330045, People's Republic of China. |
| Title: | Fine mapping of a QTL for ear size on porcine chromosome 5 and identification of high mobility group AT-hook 2 (HMGA2) as a positional candidate gene. |
| Journal: | Genetics, Selection, Evolution : GSE, 2012, 44: 6 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
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| Comments: | JF748727 g.2836A>G |
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