Release 56
(Apr 24, 2025)

QTL 23992 Description:

 Trait Information
Trait name: Subcutaneous fat thickness Vertebrate Trait Ontology: Subcutaneous adipose thickness
Trait details: 6-7th rib fat thickness Product Trait Ontology: n/a
Symbol: 67RIBBF Clinical Measurement Ontology: n/a
 QTL Map Information
Chromosome:12
QTL Peak Location:88.2 (cM)
QTL Span:105.18-105.38 (cM)
59.4-59.5 (Mbp)
Upper, "Suggestive":n/a
Upper, "Significant":n/a
Peak:
Lower, "Significant":n/a
Lower, "Suggestive":n/a
Marker type:-
Analysis type:Association
Model tested:Mendelian
Test base:n/a
Threshold significance level:Significant
P_values<0.05
Dominance effect:-0.111
Additive effect:0.158
Associated Gene:INPP5K (inositol polyphosphate-5-phosphatase K)
Cis/Trans acting type:
Links:   Edit  |   Map view

 Extended information:
(none)

User inputs on QTL #23992
  • Add your annotations
  • Add your comments
  • Report problems
  •  QTL Experiment in Brief
    Animals:Animals were Large White x Meishan pigs.
     Breeds associated:
    Design:Animals were genotyped for 2 SNPs in SKIP (INPP5K) and analyzed for fat deposition, carcass, and meat quality traits.
    Analysis:The general linear model procedure was used.
    Software:SAS
    Notes: 
    Links:Edit

     Reference
    Authors:Xiong Q, Chai J, Deng C, Jiang S, Liu Y, Huang T, Suo X, Zhang N, Li X, Yang Q, Chen M, Zheng R
    Affiliation:Hubei Key Laboratory of Animal Embryo Engineering and Molecular Breeding, Institute of Animal Husbandry and Veterinary, Hubei Academy of Agricultural Sciences, Wuhan 430064, China.
    Title:Characterization of porcine SKIP gene in skeletal muscle development: polymorphisms, association analysis, expression and regulation of cell growth in C2C12 cells.
    Journal:Meat science, 2012, 92 (4): 490-7
    Links:  PubMed  |  Abstract   |  List all data   |  Edit  

     Additional Information
    Comments:intron 6 A17G
    User inputs on reference #22682687
  • Add your comments
  • Note similar findings
  • Note contradictions
  • Cite this Data:

    Animal QTLdb: QTL23992 was published in 2012, and was curated into QTLdb on 2014-01-31. DBxREF link to this data: https://www.animalgenome.org/QTLdb/q?id=QTL_ID:23992

     

    © 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team