| QTL Map Information |
|---|
| Chromosome: | 15 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
100.8-100.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs790747253 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | -0.60 |
| Associated Gene: | PGAP1 (post-GPI attachment to proteins inositol deacylase 1) |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #257974
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were Qingping pigs. |
| Breeds associated:
|
| Design: | SNPs and indels were genotyped using 10x whole-genome resequencing, and association analysis was performed for teat number traits. |
| Analysis: | GWAS was performed using the general linear model. |
| Software: | SAMtools, GATK, VCFtools, PLINK 2.0, Beagle |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Liu Z, Li H, Zhong Z, Jiang S |
| Affiliation: | Agricultural Ministry Key Laboratory of Swine Breeding and Genetics & Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education, Huazhong Agricultural University, Wuhan 430070, China |
| Title: | A Whole Genome Sequencing-Based Genome-Wide Association Study Reveals the Potential Associations of Teat Number in Qingping Pigs |
| Journal: | Animals : an open access journal from MDPI, 2022, 12(9):1057 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | indel |
User inputs on reference #35565484
Add your comments
Note similar findings
Note contradictions
|
