| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
97.2-97.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80859223 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #258393
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Animals were American and Danish Yorkshire pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the GeneSeek Porcine 50K SNP BeadChip, and GWAS was performed for total teat number. A total of 33,326 SNPs were used for analysis. |
| Analysis: | GWAS was performed using a linear mixed model, and to investigate the proportion of genetic variances explained by individual SNPs, a Bayes C(pi) model was used. |
| Software: | Beagle 4.1, GCTA, GS3, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Fang F, Li J, Guo M, Mei Q, Yu M, Liu H, Legarra A, Xiang T |
| Affiliation: | Key Laboratory of Agricultural Animal Genetics, Breeding and Reproduction of Ministry of Education & Key Laboratory of Swine Genetics and Breeding of Ministry of Agriculture, Huazhong Agricultural University, Wuhan 430070, China |
| Title: | Genomic evaluation and genome-wide association studies for total number of teats in a combined American and Danish Yorkshire pig populations selected in China |
| Journal: | Journal of animal science, 2022, 100(7):skac174 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | American Yorkshire |
User inputs on reference #35553682
Add your comments
Note similar findings
Note contradictions
|
