| QTL Map Information |
|---|
| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
158.8-158.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs332098895 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | PHLPP1 (PH domain and leucine rich repeat protein phosphatase 1) |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were US and Canadian Duroc pigs. |
| Breeds associated:
|
| Design: | Animals were genotyped using the GeneSeek Porcine 50K SNP Chip, and GWAS was performed for backfat thickness. |
| Analysis: | A univariate linear mixed model was used for GWAS. |
| Software: | GEMMA, PLINK v1.90, GCTA, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ding R, Zhuang Z, Qiu Y, Ruan D, Wu J, Ye J, Cao L, Zhou S, Zheng E, Huang W, Wu Z, Yang J |
| Affiliation: | College of Animal Science and National Engineering Research Center for Breeding Swine Industry, South China Agricultural University, Guangdong, 510642, P. R. China |
| Title: | Identify known and novel candidate genes associated with backfat thickness in Duroc pigs by large-scale genome-wide association analysis |
| Journal: | Journal of animal science, 2022, 100(2):skac012 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | US population |
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