| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
3.8-3.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs320681793 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
VARIANCE | 6.71% | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Suhuai pigs. |
| Breeds associated:
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| Design: | Pigs were genotyped using either a GeneSeek GGP Porcine 80K chip or COMPASS Porcine 50K chip, with data imputed to full sequence, and GWAS was performed for vulva traits. |
| Analysis: | A mixed linear model was used for GWAS. Regions identified via GWAS were refined using linkage disequilibrium linkage analysis. |
| Software: | PLINK v1.09, GATK 4.0, Beagle 5.2, LDAK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Yin Y, Hou L, Liu C, Li K, Guo H, Niu P, Li Q, Huang R, Li P |
| Affiliation: | Institute of Swine Science, Nanjing Agricultural University, Nanjing 210095, China |
| Title: | Genome-Wide Association Study Identified a Quantitative Trait Locus and Two Candidate Genes on Sus scrofa Chromosome 2 Affecting Vulvar Traits of Suhuai Pigs |
| Journal: | Genes, 2022, 13(8):1294 |
| Links: |
PubMed | Abstract | List all data
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