QTL Map Information |
Chromosome: | 7 |
QTL Peak Location: | n/a |
QTL Span: | n/a 67.2-67.2 (Mbp) |
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Upper, "Suggestive": | n/a |
Upper, "Significant": | n/a |
Peak: | rs80904263 |
Lower, "Significant": | n/a |
Lower, "Suggestive": | n/a |
Marker type: | SNP |
Analysis type: | Association |
Model tested: | n/a |
Test base: | Comparison-wise |
Threshold significance level: | Significant |
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P_values | 3.90E-6 | Dominance effect: | n/a |
Additive effect: | n/a |
Associated Gene: | n/a |
Cis/Trans acting type: |  |
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Extended information: |
(none) |
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QTL Experiment in Brief |
Animals: | Animals were feral swine. |
Breeds associated:
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Design: | Animals were genotyped using the GeneSeek Genomic Profiler 80K or Illumina BeadChip array, and GWAS was performed for pseudorabies virus infection status. A total of 56,024 SNPs were used for analysis. |
Analysis: | Single-locus mixed model GWAS with efficient mixed-model association expedited (EMMAX) methodology was used. |
Software: | R stats package v4.1.1, SVS v8.9.0 |
Notes: | |
Links: | Edit |
Reference |
Authors: | Bowden CF, Kiser JN, Miller RS, Buckley AC, Boggiatto PM, Giglio RM, Brown VR, Garrick D, Neibergs HL, Piaggio AJ, Speidel SE, Smyser TJ |
Affiliation: | National Wildlife Research Center, Wildlife Services, Animal and Plant Health Inspection Service, United States Department of Agriculture, Fort Collins, CO, United States |
Title: | Genomic regions associated with pseudorabies virus infection status in naturally infected feral swine (Sus scrofa) |
Journal: | Frontiers in Genetics, 2023, 14: 1292671 |
Links: |
PubMed | Abstract | List all data
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Additional Information |
Comments: | CSHTS study population |

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