| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
67.2-67.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80904263 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 3.90E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were feral swine. |
| Breeds associated:
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| Design: | Animals were genotyped using the GeneSeek Genomic Profiler 80K or Illumina BeadChip array, and GWAS was performed for pseudorabies virus infection status. A total of 56,024 SNPs were used for analysis. |
| Analysis: | Single-locus mixed model GWAS with efficient mixed-model association expedited (EMMAX) methodology was used. |
| Software: | R stats package v4.1.1, SVS v8.9.0 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Bowden CF, Kiser JN, Miller RS, Buckley AC, Boggiatto PM, Giglio RM, Brown VR, Garrick D, Neibergs HL, Piaggio AJ, Speidel SE, Smyser TJ |
| Affiliation: | National Wildlife Research Center, Wildlife Services, Animal and Plant Health Inspection Service, United States Department of Agriculture, Fort Collins, CO, United States |
| Title: | Genomic regions associated with pseudorabies virus infection status in naturally infected feral swine (Sus scrofa) |
| Journal: | Frontiers in Genetics, 2023, 14: 1292671 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | CSHTS study population |
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