| QTL Map Information |
|---|
| Chromosome: | 2 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
1.5-1.5 (Mbp) |
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs1110653421 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | - |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Large White boars. |
| Breeds associated:
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| Design: | Pigs were genotyped using a pig 80K functional SNP genotyping chip, with data imputed to whole-genome sequence, and GWAS was performed for feed conversion ratio. |
| Analysis: | The mixed linear model association analysis using a dense genetic relationship matrix (MLMA-LOCO) method was used. |
| Software: | PLINK 1.9, Beagle 5.1, QUILT v1.0.0, bcftools, GCTA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Xiang Y, Sun J, Ma G, Dai X, Meng Y, Fu C, Zhang Y, Zhao Q, Li J, Zhang S, Zheng Z, Li X, Fu L, Li K, Qi X |
| Affiliation: | Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Livestock and Poultry Multi-Omics of MARA, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518000, China |
| Title: | Integrating Multi-Omics Data to Identify Key Functional Variants Affecting Feed Efficiency in Large White Boars |
| Journal: | Genes, 2024, 15(8):980 |
| Links: |
PubMed | Abstract | List all data
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