| QTL Map Information |
|---|
| Chromosome: | 3 |
| QTL Peak Location: | 16.16 (cM) |
| QTL Span: | 16.16-16.16 (cM)
16.8-16.8 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81305099 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | n/a |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | -8.92 |
| Additive effect: | 12.88 |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Pigs were from three experimental populations: White Duroc x Erhualian F2, Chinese Sutai half-sib, and commercial Duroc x Landrace x Yorkshire hybrid. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for meat quality traits. A final set of 44560 SNPSs were used for analysis. Association analysis was also performed for a SNP in PHKG1. |
| Analysis: | A general linear mixed model was used. |
| Software: | PLINK, R software, GenABEL |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Ma J, Yang J, Zhou L, Ren J, Liu X, Zhang H, Yang B, Zhang Z, Ma H, Xie X, Xing Y, Guo Y, Huang L |
| Affiliation: | Key Laboratory for Animal Biotechnology of Jiangxi Province and the Ministry of Agriculture of China, Jiangxi Agricultural University, Nanchang, P.R. China |
| Title: | A splice mutation in the PHKG1 gene causes high glycogen content and low meat quality in pig skeletal muscle |
| Journal: | PLoS genetics, 2014, 10(10): e1004710 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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