| QTL Map Information |
|---|
| Chromosome: | 7 |
| QTL Peak Location: | 65.56 (cM) |
| QTL Span: | 65.12-65.99 (cM)
48.2-49.0 (Mbp) |
 |
Upper, "Suggestive": | rs80936469 |
| Upper, "Significant": | n/a |
| Peak: | |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | rs80824129 |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Suggestive |
 |
VARIANCE | 1.60 | | P_values | <0.20 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were purebred and crossbred male offsrping from two sow lines: Large White and Landrace. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for incidence of cryptorchidism and scrotal/inguinal hernia. A total of 38,632 SNPs (Large White) or 39,508 SNPs (Landrace) were used for analysis. |
| Analysis: | Single-SNP GWAS was performed |
| Software: | ASReml, R software |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Sevillano CA, Lopes MS, Harlizius B, Hanenberg EH, Knol EF, Bastiaansen JW |
| Affiliation: | Animal Breeding and Genomics Centre, Wageningen University, PO Box 338, 6700 AH, Wageningen, the Netherlands |
| Title: | Genome-wide association study using deregressed breeding values for cryptorchidism and scrotal/inguinal hernia in two pig lines |
| Journal: | Genetics, Selection, Evolution : GSE, 2015, 47(1): 18 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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