| QTL Map Information |
|---|
| Chromosome: | 4 |
| QTL Peak Location: | 40.89 (cM) |
| QTL Span: | 40.89-40.89 (cM)
41.2-41.2 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs80962309 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Suggestive |
 |
P_values | <0.10 | | Dominance effect: | -0.26 |
| Additive effect: | 0.04 |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
NCBI GeneDB | Edit |
Map view
|
| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were from a Landrace-based pig line. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for teat number. A total of 32,911 SNPs were used for analysis. |
| Analysis: | A single-SNP genome-wide association study for additive and dominance effects was performed using an animal model. |
| Software: | ASReml, GenABEL in R, Haploview |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Lopes MS, Bastiaansen JW, Harlizius B, Knol EF, Bovenhuis H |
| Affiliation: | Wageningen University, Animal Breeding and Genomics Centre, Wageningen, the Netherlands |
| Title: | A genome-wide association study reveals dominance effects on number of teats in pigs |
| Journal: | PloS one, 2014, 9(8): e105867 |
| Links: |
PubMed | Abstract | List all data
| Edit |
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