Animal QTLdb Legacy Data Archive
Legacy Data
The livestock genome analysis research have been evolving rapidly. As a result
the utility of the traditional linkage-map-based QTL analysis methods/data
used since mid-1990s is diminishing as sequence-based genome maps and SNP-based
analysis are taking the stage. A total of 13,309 such data curated into the
Animal QTLdb during 1999 and 2021 have been deposited into the Github.
 | Cattle |
| GZIP Compressed file that contains 3,782 curated QTL mapped to Cattle Linkage Map (Reference: Kappes S M, Keele J W, Stone R T, McGraw R A, Sonstegard T S, Smith T P, Lopez-Corrales N L, Beattie C W, (1997). A second-generation linkage map of the bovine genome. Genome Research, 7 (3): 235-49.DOI: 10.1101/gr.7.3.235).
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| Chicken |
| GZIP Compressed file that contains 2,701 curated QTL mapped to Chicken Linkage Map (Reference: Groenen Martien A M, Wahlberg Per, Foglio Mario, Cheng Hans H, Megens Hendrik-Jan, Crooijmans Richard P M A, Besnier Francois, Lathrop Mark, Muir William M, Wong Gane Ka-Shu, Gut Ivo, Andersson Leif, (2009). A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate. Genome Research, 19 (3): 510-9.DOI: 10.1101/gr.086538.108).
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| Horse |
| GZIP Compressed file that contains 31 curated QTL mapped to Horse Linkage Map (Reference: Penedo M C T, Millon L V, Bernoco D, Bailey E, Binns M, Cholewinski G, Ellis N, Flynn J, Gralak B, Guthrie A, Hasegawa T, Lindgren G, Lyons L A, Røed K H, Swinburne J E, Tozaki T, (2005). International Equine Gene Mapping Workshop Report: a comprehensive linkage map constructed with data from new markers and by merging four mapping resources. Cytogenetic and genome research, 111: 5-15.DOI: 10.1159/000085664).
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| Pig |
| GZIP Compressed file that contains 6,099 curated QTL mapped to Pig Linkage Map (Reference: Rohrer G A, Alexander L J, Hu Z-L, Smith T P, Keele J W, Beattie C W (1996). A comprehensive map of the porcine genome. Genome Research, 6 (5): 371-91.DOI: 10.1101/gr.6.5.371).
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| Sheep |
| GZIP Compressed file that contains 592 curated QTL mapped to Sheep Linkage Map (Reference: Maddox J F, Davies K P, Crawford A M, Hulme D J, Vaiman D, Cribiu E P, Freking B A, Beh K J, Cockett N E, Kang N, Riffkin C D, Drinkwater R, Moore S S, Dodds K G, Lumsden J M, van Stijn T C, Phua S H, Adelson D L, Burkin H R, Broom J E, Buitkamp J, Cambridge L, Cushwa W T, Gerard E, Galloway S M, Harrison B, Hawken R J, Hiendleder S, Henry H M, Medrano J F, Paterson K A, Schibler L, Stone R T, van Hest B, (2001). An enhanced linkage map of the sheep genome comprising more than 1000 loci. Genome Research, 11 (7): 1275-89.DOI: 10.1101/gr.gr-1350r).
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| Rainbow trout |
| GZIP Compressed file that contains 104 curated QTL mapped to Rainbow trout Linkage Map (Reference: Palti Yniv, Genet Carine, Gao Guangtu, Hu Yuqin, You Frank M, Boussaha Mekki, Rexroad Caird E, Luo Ming-Cheng, (2012). A second generation integrated map of the rainbow trout (Oncorhynchus mykiss) genome: analysis of conserved synteny with model fish genomes. Marine biotechnology (New York, N.Y.), 14 (3): 343-57.DOI: 10.1007/s10126-011-9418-z).
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The legacy data are deposited on GitHub
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