mrkfr2p

Displays the two-points recombination (or breakage) ratio matrix of the current loci selection.

Synopsis :

The mrkfr2p command is invoked either as:

• mrkfr2p Options
• mrkfr2p

Description :

mrkfr2p prints the two-points recombination (or breakage) ratio for all pairs of loci in the current list of selected loci.

Arguments :

• Options : -u to obtain the synopsys of the normal use, -h to print a one line description, -H to print a short help.

Returns:

nothing.

Example:

CG> dsload Data/bc.cg
{1 f2 backcross 20 208 /homes/thomas/carthagene/test/Data/bc.cg}
CG> group 0.1 9

Linkage Groups :
---------------:
LOD threshold=9.00
Distance threshold=10.00:

 Group ID : Marker ID List ...
        1 : 17 19 20 18
        2 : 14
        3 : 11 13 12 16 15
        4 : 10
        5 : 2 4 3 7 6 5 9 8
        6 : 1
6
CG> mrkselset [groupget 3]

CG> mrkfr2p

Print two points recombination fractions  matrices of the loci selection :
---------------------------------------------------------------------------:

        MS11  MS13  MS12  MS16  MS15
       ------------------------------
 MS11 |------  0.1   0.1   0.2   0.2
 MS13 |  0.1 ------  0.0   0.1   0.1
 MS12 |  0.1   0.0 ------  0.1   0.0
 MS16 |  0.2   0.1   0.1 ------  0.0
 MS15 |  0.2   0.1   0.0   0.0 ------

See also:

• mrklod2p (2.3.7)
• mrkdist2p (2.3.2)