maprintdr

Precisely describes the map whose numerical Id in the heap is given using a reverse order.

Synopsis:

The maprintdr command is invoked either:

• maprintdr Options
• maprintdr MapId

Description:

The maprintdr command prints an extensive description of the map whose numerical id has been given as argument using a reverse marker ordering. The purpose of using a reverse marker ordering is to perform an easier map comparison when two maps in the heap have order which are similar up to a map reversal. Otherwise, the commands performs as maprintd.

Arguments:

• Options : -u to obtain the synopsys of the normal use, -h to print a one line description, -H to print a short help.
• MapId: the numerical id of the map in the heap.

Returns:

nothing.

Example:

CG> dsload Data/bc.cg
{1 f2 backcross 20 208 /homes/thomas/carthagene/test/Data/bc.cg}
CG> buildfw  3 3 {} 0
...
CG> maprintd 0

Map  0 : log10-likelihood =  -248.48, log-e-likelihood =  -572.16
-------:

Data Set Number  1 :

      Markers        Distance    Cumulative  Distance   Theta       2pt
Pos  Id name         Haldane     Haldane     Kosambi    (%%age)      LOD

  1   1  MS1          21.0 cM     21.0 cM     17.9 cM    17.1 %%    15.7
  2   2  MS2           6.2 cM     27.2 cM      5.8 cM     5.8 %%    33.8
  3   4  MS4           3.4 cM     30.5 cM      3.3 cM     3.3 %%    21.1
  4   5  MS5           5.5 cM     36.0 cM      5.2 cM     5.2 %%    16.3
  5   7  MS7           6.6 cM     42.6 cM      6.2 cM     6.2 %%    35.1
  6   8  MS8           2.2 cM     44.9 cM      2.2 cM     2.2 %%    40.8
  7   9  MS9           8.9 cM     53.7 cM      8.2 cM     8.1 %%    11.2
  8  11 MS11           8.9 cM     62.6 cM      8.2 cM     8.1 %%    10.9
  9  12 MS12           4.1 cM     66.7 cM      4.0 cM     4.0 %%    26.5
 10  15 MS15           4.9 cM     71.6 cM      4.7 cM     4.6 %%    26.6
 11  16 MS16          22.7 cM     94.4 cM     19.2 cM    18.3 %%    10.3
 12  18 MS18        ----------              ----------
                      94.4 cM                 84.8 cM


       12 markers, log10-likelihood =  -248.48
                   log-e-likelihood =  -572.16

CG> maprintdr 0

Map  0 : log10-likelihood =  -248.48, log-e-likelihood =  -572.16
-------:

Data Set Number  1 :

      Markers        Distance    Cumulative  Distance   Theta       2pt
Pos  Id name         Haldane     Haldane     Kosambi    (%%age)      LOD

  1  18 MS18          22.7 cM     22.7 cM     19.2 cM    18.3 %%    10.3
  2  16 MS16           4.9 cM     27.6 cM      4.7 cM     4.6 %%    26.6
  3  15 MS15           4.1 cM     31.7 cM      4.0 cM     4.0 %%    26.5
  4  12 MS12           8.9 cM     40.6 cM      8.2 cM     8.1 %%    10.9
  5  11 MS11           8.9 cM     49.5 cM      8.2 cM     8.1 %%    11.2
  6   9  MS9           2.2 cM     51.7 cM      2.2 cM     2.2 %%    40.8
  7   8  MS8           6.6 cM     58.3 cM      6.2 cM     6.2 %%    35.1
  8   7  MS7           5.5 cM     63.8 cM      5.2 cM     5.2 %%    16.3
  9   5  MS5           3.4 cM     67.2 cM      3.3 cM     3.3 %%    21.1
 10   4  MS4           6.2 cM     73.4 cM      5.8 cM     5.8 %%    33.8
 11   2  MS2          21.0 cM     94.4 cM     17.9 cM    17.1 %%    15.7
 12   1  MS1        ----------              ----------
                      94.4 cM                 84.8 cM


       12 markers, log10-likelihood =  -248.48
                   log-e-likelihood =  -572.16

CG>

See also:

• maprint (2.4.8)
• heaprintd (2.4.5)