A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
IRAK2 location ⇒ 13:55655585-55655680   CU655990,CH242-268L7,13:55649984-55661813
(Clone quality: bE268L7 on chr=13; Num_of_Contigs=5; )
IRAK2 location ⇒ 13:55658518-55658568   CU655990,CH242-268L7,13:55649984-55661813
(Clone quality: bE268L7 on chr=13; Num_of_Contigs=5; )
IRAK3 ENSSSCG00000000475 5:30472898-30545160    
IRAK3 location ⇒ 5:30473114-30473196   CU896608,CH242-209I19,5:30447399-30518809
(Clone quality: bE209I19 on chr=5; Num_of_Contigs=4; )
IRAK3 location ⇒ 5:30473260-30473352   CU896608,CH242-209I19,5:30447399-30518809
(Clone quality: bE209I19 on chr=5; Num_of_Contigs=4; )
IRAK3 location ⇒ 5:30501217-30501401   CU896608,CH242-209I19,5:30447399-30518809
(Clone quality: bE209I19 on chr=5; Num_of_Contigs=4; )
IRAK3 location ⇒ 5:30508623-30508778   CU896608,CH242-209I19,5:30447399-30518809
(Clone quality: bE209I19 on chr=5; Num_of_Contigs=4; )
IRAK4 ENSSSCG00000000799 5:70919674-70943970   FP102342,PigI-719A6,5:70839195-70984027
(Clone quality: bI719A6 on chr=5; Num_of_Contigs=1; )
IRAK4 location ⇒ 5:70920335-70920174   FP102342,PigI-719A6,5:70839195-70984027
(Clone quality: bI719A6 on chr=5; Num_of_Contigs=1; )
IRAK4 location ⇒ 5:70924155-70923968   FP102342,PigI-719A6,5:70839195-70984027
(Clone quality: bI719A6 on chr=5; Num_of_Contigs=1; )
IRAK4 location ⇒ 5:70928460-70928345   FP102342,PigI-719A6,5:70839195-70984027
(Clone quality: bI719A6 on chr=5; Num_of_Contigs=1; )
IRAK4 location ⇒ 5:70932790-70932656   FP102342,PigI-719A6,5:70839195-70984027
(Clone quality: bI719A6 on chr=5; Num_of_Contigs=1; )
IREB2   ENSSSCG00000001756 7:53601966-53649420   CU469426,CH242-238I15,7:53596084-53659833
(Clone quality: bE238I15 on chr=7; Num_of_Contigs=3; )
IRF1 ENSSSCG00000014277 2:122561792-122569263   CU856105,CH242-342E16,2:122542305-122570160
(Clone quality: bE342E16 on chr=2; Num_of_Contigs=9; )
IRF1 location ⇒ 2:122562779-122561796   CU856105,CH242-342E16,2:122542305-122570160
(Clone quality: bE342E16 on chr=2; Num_of_Contigs=9; )
IRF1 location ⇒ 2:122563508-122563370   CU856105,CH242-342E16,2:122542305-122570160
(Clone quality: bE342E16 on chr=2; Num_of_Contigs=9; )
IRF1 location ⇒ 2:122565475-122565297   CU856105,CH242-342E16,2:122542305-122570160
(Clone quality: bE342E16 on chr=2; Num_of_Contigs=9; )
IRF1 location ⇒ 2:122569262-122569035   CU856105,CH242-342E16,2:122542305-122570160
(Clone quality: bE342E16 on chr=2; Num_of_Contigs=9; )
IRF2 ENSSSCG00000003091 6:35976488-35978245   FP102597,CH242-173N22,6:35975320-35989399
(Clone quality: bE173N22 on chr=6; Num_of_Contigs=4; )
IRF2 ENSSSCG00000015782 15:42611919-42732447    
IRF2 ENSSSCG00000010159 14:57748954-57750845   CU329680,CH242-226L7,14:57748952-57759381
(Clone quality: bE226L7 on chr=14; Num_of_Contigs=7; )
IRF2 location ⇒ 15:42612500-42612080   FP085462,CH242-175F5,15:42581117-42629270
(Clone quality: bE175F5 on chr=15; Num_of_Contigs=5; )
IRF2 location ⇒ 15:42612882-42612533   FP085462,CH242-175F5,15:42581117-42629270
(Clone quality: bE175F5 on chr=15; Num_of_Contigs=5; )
IRF2 location ⇒ 15:42699500-42699321   FP085462,CH242-175F5,15:42693068-42751659
(Clone quality: bE175F5 on chr=15; Num_of_Contigs=5; )
IRF2 location ⇒ 15:42751930-42752101   CU915789,CH242-211G24,15:42751660-42753187
(Clone quality: bE211G24 on chr=15; Num_of_Contigs=21; )
IRF2BP1 ENSSSCG00000003091 6:35976488-35978245   FP102597,CH242-173N22,6:35975320-35989399
(Clone quality: bE173N22 on chr=6; Num_of_Contigs=4; )
IRF2BP1 location ⇒ 6:35976980-35978315   FP102597,CH242-173N22,6:35975320-35989399
(Clone quality: bE173N22 on chr=6; Num_of_Contigs=4; )
IRF2BP1 location ⇒ 6:35978377-35978646   FP102597,CH242-173N22,6:35975320-35989399
(Clone quality: bE173N22 on chr=6; Num_of_Contigs=4; )
IRF2BP2 ENSSSCG00000010159 14:57748954-57750845   CU329680,CH242-226L7,14:57748952-57759381
(Clone quality: bE226L7 on chr=14; Num_of_Contigs=7; )
IRF2BP2 location ⇒ 14:57750218-57750903   CU329680,CH242-226L7,14:57748952-57759381
(Clone quality: bE226L7 on chr=14; Num_of_Contigs=7; )
IRF2BP2 location ⇒ 14:57751048-57751118   CU329680,CH242-226L7,14:57748952-57759381
(Clone quality: bE226L7 on chr=14; Num_of_Contigs=7; )
IRF3 ENSSSCG00000003178 6:38190297-38260943    
IRF3 location ⇒ 6:38192214-38192390   FP102630,CH242-21M22,6:38167343-38193012
(Clone quality: bE21M22 on chr=6; Num_of_Contigs=8; )
IRF3 location ⇒ 6:38193248-38193448   FP102630,CH242-21M22,6:38193113-38201419
(Clone quality: bE21M22 on chr=6; Num_of_Contigs=8; )
IRF3 location ⇒ 6:38258365-38258551   CU928882,CH242-173G21,6:38246665-38266029
(Clone quality: bE173G21 on chr=6; Num_of_Contigs=9; )
IRF3 location ⇒ 6:38258651-38258851   CU928882,CH242-173G21,6:38246665-38266029
(Clone quality: bE173G21 on chr=6; Num_of_Contigs=9; )
IRF4 ENSSSCG00000001538 7:35706291-35728654   CU571051,CH242-525J6,7:35686365-35735821
(Clone quality: bE525J6 on chr=7; Num_of_Contigs=14; )
IRF5 location ⇒ 18:17837190-17836661   CU928618,CH242-79D19,18:17819272-17900722
(Clone quality: bE79D19 on chr=18; Num_of_Contigs=3; )
IRF5 location ⇒ 18:17837484-17837363   CU928618,CH242-79D19,18:17819272-17900722
(Clone quality: bE79D19 on chr=18; Num_of_Contigs=3; )
IRF5 location ⇒ 18:17837795-17837572   CU928618,CH242-79D19,18:17819272-17900722
(Clone quality: bE79D19 on chr=18; Num_of_Contigs=3; )
IRF5 location ⇒ 18:17950050-17950273   FP236574,CH242-108K15,18:17935919-17950352
(Clone quality: bE108K15 on chr=18; Num_of_Contigs=5; )
IRF6 ENSSSCG00000015612 9:125517815-125536524   CU855559,CH242-186K8,9:125498250-125543189
(Clone quality: bE186K8 on chr=9; Num_of_Contigs=10; )
IRF6 location ⇒ 9:125528297-125528504   CU855559,CH242-186K8,9:125498250-125543189
(Clone quality: bE186K8 on chr=9; Num_of_Contigs=10; )
IRF6 location ⇒ 9:125533772-125534164   CU855559,CH242-186K8,9:125498250-125543189
(Clone quality: bE186K8 on chr=9; Num_of_Contigs=10; )
IRF6 location ⇒ 9:125535908-125536524   CU855559,CH242-186K8,9:125498250-125543189
(Clone quality: bE186K8 on chr=9; Num_of_Contigs=10; )
IRF6 location ⇒ 9:125657526-125657319   CU481895,CH242-502F19,9:125656686-125658690
(Clone quality: bE502F19 on chr=9; Num_of_Contigs=35; )
IRF7 ENSSSCG00000012853 2:291676-294411    
IRF7 location ⇒ 2:291676-291920    
IRF7 location ⇒ 2:292242-292451   FP015900,CH242-40P17,2:291676-352927
(Clone quality: bE40P17 on chr=2; Num_of_Contigs=6; )
IRF7 location ⇒ 2:293379-293917   FP015900,CH242-40P17,2:291676-352927
(Clone quality: bE40P17 on chr=2; Num_of_Contigs=6; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-33

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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