A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
KCND3   ENSSSCG00000006782 4:112808035-113021379    
KCNE1 ENSSSCG00000012049 13:139831032-139831421   CU468438,CH242-57G7,13:139758408-139835410
(Clone quality: bE57G7 on chr=13; Num_of_Contigs=2; )
KCNE1 location ⇒ 13:139831310-139831073   CU468438,CH242-57G7,13:139758408-139835410
(Clone quality: bE57G7 on chr=13; Num_of_Contigs=2; )
KCNE1L   ENSSSCG00000012582 X:88840648-88841085   FP102602,CH242-17O13,X:88793904-88856215
(Clone quality: bE17O13 on chr=X; Num_of_Contigs=3; )
KCNE2   ENSSSCG00000012045 13:139759690-139760061   CU468438,CH242-57G7,13:139758408-139835410
(Clone quality: bE57G7 on chr=13; Num_of_Contigs=2; )
KCNE3   ENSSSCG00000014839 9:8441252-8441551   CU928090,CH242-136E14,9:8413147-8465214
(Clone quality: bE136E14 on chr=9; Num_of_Contigs=5; )
KCNE4   ENSSSCG00000016222 15:114817627-114818139   CU896599,CH242-260E21,15:114786304-114826397
(Clone quality: bE260E21 on chr=15; Num_of_Contigs=5; )
KCNG1   ENSSSCG00000007476 17:54619575-54639158 CR974477,CH242-217L7,17:54579306-54781966
(No clone quality info on bE217L7) 		 
KCNG2 ENSSSCG00000005780 1:291097214-291122296    
KCNG2 location ⇒ 1:291097708-291097315   CU041273,CH242-39O17,1:291029585-291098409
(Clone quality: bE39O17 on chr=1; Num_of_Contigs=4; )
KCNG2 location ⇒ 1:291098000-291097809   CU041273,CH242-39O17,1:291029585-291098409
(Clone quality: bE39O17 on chr=1; Num_of_Contigs=4; )
KCNG2 location ⇒ 1:291122121-291121943   CU571006,CH242-147O10,1:291108728-291199134
(Clone quality: bE147O10 on chr=1; Num_of_Contigs=4; )
KCNG2 location ⇒ 1:291324608-291324786   CU570941,CH242-28B8,1:291244716-291331718
(Clone quality: bE28B8 on chr=1; Num_of_Contigs=7; )
KCNG3   ENSSSCG00000008465 3:91341479-91394483   CU861975,CH242-29C2,3:91315848-91414198
(Clone quality: bE29C2 on chr=3; Num_of_Contigs=4; )
KCNG4   ENSSSCG00000002677 6:2997026-3009017   FP085590,CH242-130L20,6:2950464-3147598
(Clone quality: bE130L20 on chr=6; Num_of_Contigs=2; )
KCNH2 ENSSSCG00000016448 18:5361066-5376452    
KCNH3   ENSSSCG00000000203 5:14318889-14339675    
KCNH4   ENSSSCG00000017411 12:18325882-18342708   CU856598,CH242-362F6,12:18319906-18418389
(Clone quality: bE362F6 on chr=12; Num_of_Contigs=5; )
KCNH5   ENSSSCG00000005117 1:203953036-204047668    
KCNH6   ENSSSCG00000017295 12:12939745-12959871    
KCNH7   ENSSSCG00000015898 15:64270719-64405761    
KCNH8   ENSSSCG00000011204 13:5450394-5573851    
KCNIP1   ENSSSCG00000017003 16:50490829-50510273   CU856091,CH242-162P18,16:50481187-50564376
(Clone quality: bE162P18 on chr=16; Num_of_Contigs=3; )
KCNIP2 ENSSSCG00000010570 14:117727152-117743114    
KCNIP2 location ⇒ 14:117727959-117727853   CU582957,CH242-468E22,14:117724309-117732322
(Clone quality: bE468E22 on chr=14; Num_of_Contigs=11; )
KCNIP2 location ⇒ 14:117728231-117728121   CU582957,CH242-468E22,14:117724309-117732322
(Clone quality: bE468E22 on chr=14; Num_of_Contigs=11; )
KCNIP2 location ⇒ 14:117728424-117728351   CU582957,CH242-468E22,14:117724309-117732322
(Clone quality: bE468E22 on chr=14; Num_of_Contigs=11; )
KCNIP2 location ⇒ 14:117729193-117729067   CU582957,CH242-468E22,14:117724309-117732322
(Clone quality: bE468E22 on chr=14; Num_of_Contigs=11; )
KCNIP3 ENSSSCG00000008119 3:41558573-41567835    
KCNIP3 location ⇒ 3:41558580-41558708   CU855872,CH242-522M16,3:41538151-41562620
(Clone quality: bE522M16 on chr=3; Num_of_Contigs=3; )
KCNIP3 location ⇒ 3:41559441-41559514   CU855872,CH242-522M16,3:41538151-41562620
(Clone quality: bE522M16 on chr=3; Num_of_Contigs=3; )
KCNIP3 location ⇒ 3:41565044-41565154   CU855872,CH242-522M16,3:41562721-41571436
(Clone quality: bE522M16 on chr=3; Num_of_Contigs=3; )
KCNIP3 location ⇒ 3:41566298-41566404   CU855872,CH242-522M16,3:41562721-41571436
(Clone quality: bE522M16 on chr=3; Num_of_Contigs=3; )
KCNJ1   ENSSSCG00000015236 9:54142538-54143656   CU855729,CH242-69O11,9:54139204-54191610
(Clone quality: bE69O11 on chr=9; Num_of_Contigs=7; )
KCNJ11   ENSSSCG00000013379 2:39082037-39083203   FP089535,CH242-516C12,2:39073292-39134265
(Clone quality: bE516C12 on chr=2; Num_of_Contigs=7; )
KCNJ13   ENSSSCG00000016292 15:125669400-125678801   CU466365,CH242-117P4,15:125648994-125694415
(Clone quality: bE117P4 on chr=15; Num_of_Contigs=11; )
KCNJ14   ENSSSCG00000003135 6:37490192-37493193   FP102301,CH242-20J11,6:37475901-37499164
(Clone quality: bE20J11 on chr=6; Note=In Finishing;)
KCNJ15   ENSSSCG00000012066 13:142440893-142442020   CU466352,CH242-453H4,13:142328362-142494251
(Clone quality: bE453H4 on chr=13; Num_of_Contigs=3; )
KCNJ16   ENSSSCG00000017253 12:8686934-8688193   CU856196,CH242-507K1,12:8607483-8714475
(Clone quality: bE507K1 on chr=12; Num_of_Contigs=4; )
KCNJ2 ENSSSCG00000017252 12:8647274-8648557   CU856196,CH242-507K1,12:8607483-8714475
(Clone quality: bE507K1 on chr=12; Num_of_Contigs=4; )
KCNJ2 location ⇒ 12:8644368-8643977   CU856196,CH242-507K1,12:8607483-8714475
(Clone quality: bE507K1 on chr=12; Num_of_Contigs=4; )
KCNJ2 location ⇒ 12:8645037-8644433   CU856196,CH242-507K1,12:8607483-8714475
(Clone quality: bE507K1 on chr=12; Num_of_Contigs=4; )
KCNJ2 location ⇒ 12:8647005-8646675   CU856196,CH242-507K1,12:8607483-8714475
(Clone quality: bE507K1 on chr=12; Num_of_Contigs=4; )
KCNJ2 location ⇒ 12:8648783-8647040   CU856196,CH242-507K1,12:8607483-8714475
(Clone quality: bE507K1 on chr=12; Num_of_Contigs=4; )
KCNJ3   ENSSSCG00000015870 15:58133420-58281322    
KCNJ4   ENSSSCG00000000106 5:5907712-5909055   CU915420,CH242-431H3,5:5887550-5918154
(Clone quality: bE431H3 on chr=5; Num_of_Contigs=3; )
KCNJ6   ENSSSCG00000012065 13:141758309-141759283   CU855568,CH242-31N9,13:141729766-141776866
(Clone quality: bE31N9 on chr=13; Num_of_Contigs=7; )
KCNJ8   ENSSSCG00000000573 5:49706686-49714369   CU633289,CH242-396D5,5:49705849-49721690
(Clone quality: bE396D5 on chr=5; Num_of_Contigs=9; )
KCNJ9   ENSSSCG00000006393 4:93852115-93856657 CU138477,CH242-105O19,4:93708821-93889364
(Clone quality: bE105O19 on chr=4; Num_of_Contigs=5; ) 		 
KCNK1   ENSSSCG00000010163 14:58802791-58853053    
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-1

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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