A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
URP2 location ⇒ 2:6273384-6273255   CU861533,CH242-1H13,2:6266781-6274991
(Clone quality: bE1H13 on chr=2; Num_of_Contigs=14; )
URP2 location ⇒ 2:6273963-6273730   CU861533,CH242-1H13,2:6266781-6274991
(Clone quality: bE1H13 on chr=2; Num_of_Contigs=14; )
URP2 location ⇒ 2:6274522-6274396   CU861533,CH242-1H13,2:6266781-6274991
(Clone quality: bE1H13 on chr=2; Num_of_Contigs=14; )
USE1   ENSSSCG00000013875 2:61695562-61699215   CU914416,CH242-266I16,2:61677550-61716362
(Clone quality: bE266I16 on chr=2; Num_of_Contigs=8; )
USF1 ENSSSCG00000006371 4:93004888-93010516   CU137698,CH242-71N12,4:92983937-93019431
(Clone quality: bE71N12 on chr=4; Num_of_Contigs=19; )
USF1 location ⇒ 4:93006988-93006786   CU137698,CH242-71N12,4:92983937-93019431
(Clone quality: bE71N12 on chr=4; Num_of_Contigs=19; )
USF1 location ⇒ 4:93007328-93007224   CU137698,CH242-71N12,4:92983937-93019431
(Clone quality: bE71N12 on chr=4; Num_of_Contigs=19; )
USF1 location ⇒ 4:93007745-93007626   CU137698,CH242-71N12,4:92983937-93019431
(Clone quality: bE71N12 on chr=4; Num_of_Contigs=19; )
USF1 location ⇒ 4:93008407-93008313   CU137698,CH242-71N12,4:92983937-93019431
(Clone quality: bE71N12 on chr=4; Num_of_Contigs=19; )
USF2 ENSSSCG00000002885 6:30028890-30037927   CU694505,CH242-50N19,6:30028872-30044834
(Clone quality: bE50N19 on chr=6; Num_of_Contigs=14; )
USF2 location ⇒ 6:30029639-30029831   CU694505,CH242-50N19,6:30028872-30044834
(Clone quality: bE50N19 on chr=6; Num_of_Contigs=14; )
USF2 location ⇒ 6:30030252-30030404   CU694505,CH242-50N19,6:30028872-30044834
(Clone quality: bE50N19 on chr=6; Num_of_Contigs=14; )
USF2 location ⇒ 6:30036774-30036870   CU694505,CH242-50N19,6:30028872-30044834
(Clone quality: bE50N19 on chr=6; Num_of_Contigs=14; )
USF2 location ⇒ 6:30037021-30037150   CU694505,CH242-50N19,6:30028872-30044834
(Clone quality: bE50N19 on chr=6; Num_of_Contigs=14; )
USH1C   ENSSSCG00000013377 2:38892253-38972132    
USH1G   ENSSSCG00000017223 12:4533960-4562906    
USH2A location ⇒ 10:5965179-5965706   CU896606,CH242-137F17,10:5907509-5969955
(Clone quality: bE137F17 on chr=10; Num_of_Contigs=4; )
USO1   ENSSSCG00000008971 8:60790266-60834903   CU463913,CH242-235E19,8:60775338-60863300
(Clone quality: bE235E19 on chr=8; Num_of_Contigs=5; )
USP1   ENSSSCG00000003820 6:106099375-106110180   FP067351,CH242-80C11,6:106051433-106124076
(Clone quality: bE80C11 on chr=6; Num_of_Contigs=4; )
USP10   ENSSSCG00000002670 6:2571484-2589334    
USP11   ENSSSCG00000012273 X:41895477-41910308    
USP12   ENSSSCG00000009302 11:3658758-3709614    
USP13 ENSSSCG00000011765 13:89535482-89574483    
USP15   ENSSSCG00000000457 5:26393960-26500256    
USP18 location ⇒ 5:66010992-66010791   CU914454,CH242-45H20,5:66007355-66013978
(Clone quality: bE45H20 on chr=5; Num_of_Contigs=14; )
USP18 location ⇒ 5:66011381-66011049   CU914454,CH242-45H20,5:66007355-66013978
(Clone quality: bE45H20 on chr=5; Num_of_Contigs=14; )
USP18 location ⇒ 5:66014791-66014621   CU914454,CH242-45H20,5:66014079-66022901
(Clone quality: bE45H20 on chr=5; Num_of_Contigs=14; )
USP18 location ⇒ 5:66044004-66044103   CU914454,CH242-45H20,5:66043936-66047770
(Clone quality: bE45H20 on chr=5; Num_of_Contigs=14; )
USP19   ENSSSCG00000011375 13:26677517-26686908   CU856115,CH242-45E6,13:26664108-26688116
(Clone quality: bE45E6 on chr=13; Num_of_Contigs=7; )
USP2 ENSSSCG00000015120 9:45174159-45180861   CU915638,CH242-115L13,9:45168416-45215016
(Clone quality: bE115L13 on chr=9; Num_of_Contigs=6; )
USP2 location ⇒ 9:45174354-45174196   CU915638,CH242-115L13,9:45168416-45215016
(Clone quality: bE115L13 on chr=9; Num_of_Contigs=6; )
USP2 location ⇒ 9:45180861-45180481   CU915638,CH242-115L13,9:45168416-45215016
(Clone quality: bE115L13 on chr=9; Num_of_Contigs=6; )
USP2 location ⇒ 9:45266353-45266195   CU951455,CH242-416J8,9:45248065-45272580
(Clone quality: bE416J8 on chr=9; Num_of_Contigs=2; )
USP2 location ⇒ 9:45272900-45272683   CU951455,CH242-416J8,9:45272681-45278375
(Clone quality: bE416J8 on chr=9; Num_of_Contigs=2; )
USP21   ENSSSCG00000006362 4:92797517-92803656   CU606874,CH242-28G15,4:92745461-92814223
(Clone quality: bE28G15 on chr=4; Num_of_Contigs=6; )
USP25 location ⇒ 9:40415590-40415540   CU929720,CH242-221O2,9:40411301-40428460
(Clone quality: bE221O2 on chr=9; Num_of_Contigs=7; )
USP26   ENSSSCG00000012678 X:107014423-107017137 CU694746,CH242-67N20,X:106964653-107076890
(Clone quality: bE67N20 on chr=X; Num_of_Contigs=2; ) 		 
USP28   ENSSSCG00000015052 9:40380230-40426454    
USP3   ENSSSCG00000004563 1:111821233-111842067   CU550694,CH242-9A12,1:111815744-111862500
(Clone quality: bE9A12 on chr=1; Num_of_Contigs=4; )
USP30   ENSSSCG00000009940 14:42045138-42072928   CT954284,CH242-241M1,14:42019840-42206297
(Clone quality: bE241M1 on chr=14; Num_of_Contigs=1; )
USP31   ENSSSCG00000007834 3:20909513-21012430    
USP34   ENSSSCG00000008382 3:74019457-74204561    
USP35   ENSSSCG00000014892 9:12745944-12748991   CU694636,CH242-522D10,9:12733842-12749242
(Clone quality: bE522D10 on chr=9; Num_of_Contigs=6; )
USP36   ENSSSCG00000017165 12:1933672-1965370 CU942393,CH242-200M2,12:1864056-2044534
(Clone quality: bE200M2 on chr=14; Num_of_Contigs=6; ) 		 
USP37   ENSSSCG00000016194 15:113668384-113748113    
USP38   ENSSSCG00000009049 8:72797910-72807663   CU930040,CH242-12N22,8:72797520-72810487
(Clone quality: bE12N22 on chr=8; Num_of_Contigs=2; )
USP39   ENSSSCG00000008235 3:54069003-54084558   CU928286,CH242-219K12,3:54043219-54085564
(Clone quality: bE219K12 on chr=3; Num_of_Contigs=4; )
USP4   ENSSSCG00000011383 13:26814246-26830023   CU856115,CH242-45E6,13:26808459-26832486
(Clone quality: bE45E6 on chr=13; Num_of_Contigs=7; )
USP40   ENSSSCG00000016306 15:126578143-126680753    
USP42   ENSSSCG00000007594 3:4167290-4180947    
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-33

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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