A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
PSEN1 location ⇒ 7:104499367-104499623   CU855510,CH242-242O15,7:104468835-104499972
(Clone quality: bE242O15 on chr=7; Num_of_Contigs=12; )
PSEN1 location ⇒ 7:104516414-104516140   CU914658,CH242-289F14,7:104499973-104562452
(Clone quality: bE289F14 on chr=7; Num_of_Contigs=6; )
PSEN1 location ⇒ 7:104525210-104525039   CU914658,CH242-289F14,7:104499973-104562452
(Clone quality: bE289F14 on chr=7; Num_of_Contigs=6; )
PSEN1 location ⇒ 7:104544464-104544243   CU914658,CH242-289F14,7:104499973-104562452
(Clone quality: bE289F14 on chr=7; Num_of_Contigs=6; )
PSENEN   ENSSSCG00000002897 6:30168184-30169837   FP243365,CH242-219O7,6:30147881-30183141
(Clone quality: bE219O7 on chr=6; Num_of_Contigs=6; )
PSG1   location ⇒ 6:33987328-33987395   FP236582,CH242-238L13,6:33985368-33993670
(Clone quality: bE238L13 on chr=6; Num_of_Contigs=11; )
PSG5 location ⇒ 1:130593281-130593202   CU062489,CH242-1L12,1:130591260-130619520
(Clone quality: bE1L12 on chr=1; Num_of_Contigs=6; )
PSIP1   ENSSSCG00000005183 1:216336590-216510638    
PSMA1 ENSSSCG00000013391 2:41757230-41772409   CU487223,CH242-352O9,2:41664838-41804442
(Clone quality: bE352O9 on chr=2; Num_of_Contigs=2; )
PSMA1 location ⇒ 2:41759733-41759836   CU487223,CH242-352O9,2:41664838-41804442
(Clone quality: bE352O9 on chr=2; Num_of_Contigs=2; )
PSMA1 location ⇒ 2:41765674-41765804   CU487223,CH242-352O9,2:41664838-41804442
(Clone quality: bE352O9 on chr=2; Num_of_Contigs=2; )
PSMA1 location ⇒ 2:41770648-41770760   CU487223,CH242-352O9,2:41664838-41804442
(Clone quality: bE352O9 on chr=2; Num_of_Contigs=2; )
PSMA1 location ⇒ 2:41772039-41772407   CU487223,CH242-352O9,2:41664838-41804442
(Clone quality: bE352O9 on chr=2; Num_of_Contigs=2; )
PSMA2 location ⇒ 14:78539529-78539993   CU469444,CH242-512O8,14:78533182-78541964
(Clone quality: bE512O8 on chr=14; Num_of_Contigs=6; )
PSMA2 location ⇒ 14:78623863-78623399   CT956006,CH242-129H16,14:78541965-78710978
(Clone quality: bE129H16 on chr=14; Num_of_Contigs=1; )
PSMA3 ENSSSCG00000005072 1:196211247-196238366   CU582907,CH242-119K11,1:196211223-196387617
(Clone quality: bE119K11 on chr=1; Num_of_Contigs=1; )
PSMA3 location ⇒ 1:196211279-196211383   CU582907,CH242-119K11,1:196211223-196387617
(Clone quality: bE119K11 on chr=1; Num_of_Contigs=1; )
PSMA3 location ⇒ 1:196215145-196215228   CU582907,CH242-119K11,1:196211223-196387617
(Clone quality: bE119K11 on chr=1; Num_of_Contigs=1; )
PSMA3 location ⇒ 1:196222247-196222373   CU582907,CH242-119K11,1:196211223-196387617
(Clone quality: bE119K11 on chr=1; Num_of_Contigs=1; )
PSMA3 location ⇒ 1:196225580-196225682   CU582907,CH242-119K11,1:196211223-196387617
(Clone quality: bE119K11 on chr=1; Num_of_Contigs=1; )
PSMA4 ENSSSCG00000001754 7:53558430-53566497   CU469426,CH242-238I15,7:53527495-53574187
(Clone quality: bE238I15 on chr=7; Num_of_Contigs=3; )
PSMA4 location ⇒ 7:53558811-53558615   CU469426,CH242-238I15,7:53527495-53574187
(Clone quality: bE238I15 on chr=7; Num_of_Contigs=3; )
PSMA4 location ⇒ 7:53560783-53560660   CU469426,CH242-238I15,7:53527495-53574187
(Clone quality: bE238I15 on chr=7; Num_of_Contigs=3; )
PSMA4 location ⇒ 7:53561405-53561272   CU469426,CH242-238I15,7:53527495-53574187
(Clone quality: bE238I15 on chr=7; Num_of_Contigs=3; )
PSMA4 location ⇒ 7:53564449-53564284   CU469426,CH242-238I15,7:53527495-53574187
(Clone quality: bE238I15 on chr=7; Num_of_Contigs=3; )
PSMA5 ENSSSCG00000010213 14:66839036-66839800   CU468520,CH242-402M7,14:66758226-66885237
(Clone quality: bE402M7 on chr=14; Num_of_Contigs=3; )
PSMA5 ENSSSCG00000006830 4:115210927-115233242    
PSMA5 location ⇒ 4:115221763-115221893   CU633714,CH242-413N19,4:115211158-115226704
(Clone quality: bE413N19 on chr=4; Num_of_Contigs=4; )
PSMA5 location ⇒ 4:115224777-115224886   CU633714,CH242-413N19,4:115211158-115226704
(Clone quality: bE413N19 on chr=4; Num_of_Contigs=4; )
PSMA5 location ⇒ 4:115225664-115225766   CU633714,CH242-413N19,4:115211158-115226704
(Clone quality: bE413N19 on chr=4; Num_of_Contigs=4; )
PSMA5 location ⇒ 4:115232986-115233226   CU207229,CH242-373I13,4:115226705-115237058
(Clone quality: bE373I13 on chr=4; Num_of_Contigs=14; )
PSMA6 ENSSSCG00000001951 7:70475042-70500160   CT797470,CH242-32J12,7:70421409-70573491
(Clone quality: bE32J12 on chr=7; Num_of_Contigs=1; )
PSMA6 location ⇒ 7:70475101-70475209   CT797470,CH242-32J12,7:70421409-70573491
(Clone quality: bE32J12 on chr=7; Num_of_Contigs=1; )
PSMA6 location ⇒ 7:70494013-70494173   CT797470,CH242-32J12,7:70421409-70573491
(Clone quality: bE32J12 on chr=7; Num_of_Contigs=1; )
PSMA6 location ⇒ 7:70495481-70495659   CT797470,CH242-32J12,7:70421409-70573491
(Clone quality: bE32J12 on chr=7; Num_of_Contigs=1; )
PSMA6 location ⇒ 7:70499922-70500141   CT797470,CH242-32J12,7:70421409-70573491
(Clone quality: bE32J12 on chr=7; Num_of_Contigs=1; )
PSMA8   ENSSSCG00000003717 6:76330254-76367557   CU442718,CH242-86O14,6:76303346-76382442
(Clone quality: bE86O14 on chr=6; Num_of_Contigs=2; )
PSMB10 location ⇒ 4:93401683-93401507   CU915315,CH242-208F9,4:93261946-93408226
(Clone quality: bE208F9 on chr=4; Num_of_Contigs=2; )
PSMB10 location ⇒ 4:93402099-93401964   CU915315,CH242-208F9,4:93261946-93408226
(Clone quality: bE208F9 on chr=4; Num_of_Contigs=2; )
PSMB10 location ⇒ 7:2493788-2493880   CU041347,CH242-100I6,7:2471583-2575648
(Clone quality: bE100I6 on chr=7; Num_of_Contigs=4; )
PSMB10 location ⇒ 7:3001978-3001873   CU041352,CH242-333I16,7:3001628-3033508
(Clone quality: bE333I16 on chr=7; Num_of_Contigs=9; )
PSMB10 location ⇒ 7:3927197-3927277   CU469172,CH242-81O15,7:3882429-4039321
(Clone quality: bE81O15 on chr=7; Num_of_Contigs=2; )
PSMB10 location ⇒ 7:6175831-6175739   CU368527,CH242-381P15,7:6145729-6189965
(Clone quality: bE381P15 on chr=7; Num_of_Contigs=4; )
PSMB11   ENSSSCG00000002038 7:82396161-82397036   CU468526,CH242-14D10,7:82382718-82403264
(Clone quality: bE14D10 on chr=7; Num_of_Contigs=8; )
PSMB4 ENSSSCG00000006623 4:101789835-101792197 CU179724,CH242-246E20,4:101737894-101911024
(Clone quality: bE246E20 on chr=4; Num_of_Contigs=5; ) 		 
PSMB4 location ⇒ 4:101790557-101790446 CU179724,CH242-246E20,4:101737894-101911024
(Clone quality: bE246E20 on chr=4; Num_of_Contigs=5; ) 		 
PSMB4 location ⇒ 4:101791023-101790940 CU179724,CH242-246E20,4:101737894-101911024
(Clone quality: bE246E20 on chr=4; Num_of_Contigs=5; ) 		 
PSMB4 location ⇒ 4:101791305-101791159 CU179724,CH242-246E20,4:101737894-101911024
(Clone quality: bE246E20 on chr=4; Num_of_Contigs=5; ) 		 
PSMB4 location ⇒ 4:101791776-101791569 CU179724,CH242-246E20,4:101737894-101911024
(Clone quality: bE246E20 on chr=4; Num_of_Contigs=5; ) 		 
PSMB5 location ⇒ 7:82373711-82373202   CU468526,CH242-14D10,7:82367422-82382617
(Clone quality: bE14D10 on chr=7; Num_of_Contigs=8; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-1800, 1801-1850, 1851-1900, 1901-1950, 1951-2000, 2001-2050, 2051-2100, 2101-2150, 2151-2200, 2201-21

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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