A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
PSMD10 location ⇒ X:86719616-86719448   CU463012,CH242-276J1,X:86710402-86732969
(Clone quality: bE276J1 on chr=X; Num_of_Contigs=7; )
PSMD10 location ⇒ X:86719856-86719710   CU463012,CH242-276J1,X:86710402-86732969
(Clone quality: bE276J1 on chr=X; Num_of_Contigs=7; )
PSMD10 location ⇒ X:86723991-86723854   CU463012,CH242-276J1,X:86710402-86732969
(Clone quality: bE276J1 on chr=X; Num_of_Contigs=7; )
PSMD11 ENSSSCG00000017731 12:40189932-40217280    
PSMD11 location ⇒ 12:40190215-40190004   CU695029,CH242-169J22,12:40003526-40192006
(Clone quality: bE169J22 on chr=12; Num_of_Contigs=1; )
PSMD11 location ⇒ 12:40190475-40190332   CU695029,CH242-169J22,12:40003526-40192006
(Clone quality: bE169J22 on chr=12; Num_of_Contigs=1; )
PSMD11 location ⇒ 12:40197134-40196987   CU463935,CH242-491J12,12:40192007-40218756
(Clone quality: bE491J12 on chr=12; Num_of_Contigs=8; )
PSMD11 location ⇒ 12:40202013-40201815   CU463935,CH242-491J12,12:40192007-40218756
(Clone quality: bE491J12 on chr=12; Num_of_Contigs=8; )
PSMD12 ENSSSCG00000017273 12:11715356-11739908    
PSMD12 location ⇒ 12:11723604-11723482   CU466377,CH242-180I8,12:11718548-11748923
(Clone quality: bE180I8 on chr=12; Num_of_Contigs=7; )
PSMD12 location ⇒ 12:11723843-11723692   CU466377,CH242-180I8,12:11718548-11748923
(Clone quality: bE180I8 on chr=12; Num_of_Contigs=7; )
PSMD12 location ⇒ 12:11731763-11731634   CU466377,CH242-180I8,12:11718548-11748923
(Clone quality: bE180I8 on chr=12; Num_of_Contigs=7; )
PSMD12 location ⇒ 12:11739859-11739705   CU466377,CH242-180I8,12:11718548-11748923
(Clone quality: bE180I8 on chr=12; Num_of_Contigs=7; )
PSMD13 ENSSSCG00000014559 2:139858756-139872960   CU928488,CH242-163I11,2:139819049-139956868
(Clone quality: bE163I11 on chr=2; Num_of_Contigs=2; )
PSMD13 location ⇒ 2:139859248-139859400   CU928488,CH242-163I11,2:139819049-139956868
(Clone quality: bE163I11 on chr=2; Num_of_Contigs=2; )
PSMD13 location ⇒ 2:139867546-139867719   CU928488,CH242-163I11,2:139819049-139956868
(Clone quality: bE163I11 on chr=2; Num_of_Contigs=2; )
PSMD13 location ⇒ 2:139872511-139872784   CU928488,CH242-163I11,2:139819049-139956868
(Clone quality: bE163I11 on chr=2; Num_of_Contigs=2; )
PSMD13 location ⇒ 2:139872830-139872960   CU928488,CH242-163I11,2:139819049-139956868
(Clone quality: bE163I11 on chr=2; Num_of_Contigs=2; )
PSMD14 ENSSSCG00000015892 15:63447033-63473533   CU571357,CH242-300O22,15:63426524-63482865
(Clone quality: bE300O22 on chr=15; Num_of_Contigs=9; )
PSMD14 location ⇒ 15:63356409-63356529   CU571357,CH242-300O22,15:63348938-63359420
(Clone quality: bE300O22 on chr=15; Num_of_Contigs=9; )
PSMD14 location ⇒ 15:63360493-63360647   CU571357,CH242-300O22,15:63359521-63365220
(Clone quality: bE300O22 on chr=15; Num_of_Contigs=9; )
PSMD14 location ⇒ 15:63447451-63447034   CU571357,CH242-300O22,15:63426524-63482865
(Clone quality: bE300O22 on chr=15; Num_of_Contigs=9; )
PSMD14 location ⇒ 15:63473517-63473407   CU571357,CH242-300O22,15:63426524-63482865
(Clone quality: bE300O22 on chr=15; Num_of_Contigs=9; )
PSMD3 ENSSSCG00000017489 12:20307259-20323043   CU928026,CH242-256H23,12:20268098-20354915
(Clone quality: bE256H23 on chr=12; Num_of_Contigs=2; )
PSMD3 location ⇒ 12:20117117-20117310   CU929462,CH242-284N22,12:20115283-20120754
(Clone quality: bE284N22 on chr=12; Num_of_Contigs=12; )
PSMD3 location ⇒ 12:20309018-20308865   CU928026,CH242-256H23,12:20268098-20354915
(Clone quality: bE256H23 on chr=12; Num_of_Contigs=2; )
PSMD3 location ⇒ 12:20309597-20309474   CU928026,CH242-256H23,12:20268098-20354915
(Clone quality: bE256H23 on chr=12; Num_of_Contigs=2; )
PSMD3 location ⇒ 12:20313960-20313767   CU928026,CH242-256H23,12:20268098-20354915
(Clone quality: bE256H23 on chr=12; Num_of_Contigs=2; )
PSMD4 ENSSSCG00000006628 4:101948354-101986654 CU138569,CH242-265M12,4:101911025-102092543
(Clone quality: bE265M12 on chr=4; Num_of_Contigs=8; ) 		 
PSMD4 location ⇒ 8:93175909-93176690   CU929800,CH242-428G3,8:93174148-93177593
(Clone quality: bE428G3 on chr=8; Num_of_Contigs=7; )
PSMD4 location ⇒ 8:93176689-93176995   CU929800,CH242-428G3,8:93174148-93177593
(Clone quality: bE428G3 on chr=8; Num_of_Contigs=7; )
PSMD5 ENSSSCG00000005507 1:274385760-274439465    
PSMD5 location ⇒ 1:4505163-4505087   FP102297,CH242-132L17,1:4501277-4507943
(Clone quality: bE132L17 on chr=1; Num_of_Contigs=18; )
PSMD5 location ⇒ 1:7896279-7896171   FP236219,CH242-342G7,1:7888437-7900388
(Clone quality: bE342G7 on chr=1; Num_of_Contigs=3; )
PSMD5 location ⇒ 1:8095171-8095063 FP085554,CH242-84O6,1:8054542-8235565
(Clone quality: bE84O6 on chr=1; Num_of_Contigs=4; ) 		 
PSMD5 location ⇒ 1:9380816-9380684   CU570667,CH242-519K4,1:9365903-9404839
(Clone quality: bE519K4 on chr=1; Num_of_Contigs=9; )
PSMD6   ENSSSCG00000011494 13:38360227-38380942    
PSMD8 ENSSSCG00000002956 6:32498417-32505467   FP236590,CH242-507G2,6:32461085-32547641
(Clone quality: bE507G2 on chr=6; Num_of_Contigs=4; )
PSMD8 location ⇒ 1:238603572-238602611   CU633596,CH242-504A9,1:238577413-238614868
(Clone quality: bE504A9 on chr=1; Num_of_Contigs=3; )
PSMD9 ENSSSCG00000009804 14:30848711-30876075   CT737291,CH242-160P22,14:30791235-30951915
(Clone quality: bE160P22 on chr=14; Num_of_Contigs=1; )
PSMD9 location ⇒ 14:30849245-30848867   CT737291,CH242-160P22,14:30791235-30951915
(Clone quality: bE160P22 on chr=14; Num_of_Contigs=1; )
PSMD9 location ⇒ 14:30863417-30863315   CT737291,CH242-160P22,14:30791235-30951915
(Clone quality: bE160P22 on chr=14; Num_of_Contigs=1; )
PSMD9 location ⇒ 14:30865628-30865416   CT737291,CH242-160P22,14:30791235-30951915
(Clone quality: bE160P22 on chr=14; Num_of_Contigs=1; )
PSMD9 location ⇒ 14:30876062-30875803   CT737291,CH242-160P22,14:30791235-30951915
(Clone quality: bE160P22 on chr=14; Num_of_Contigs=1; )
PSME1 ENSSSCG00000002006 7:81502652-81505393   CT961055,CH242-32K2,7:81442434-81553552
(Clone quality: bE32K2 on chr=7; Num_of_Contigs=2; )
PSME1 location ⇒ 7:81502878-81502660   CT961055,CH242-32K2,7:81442434-81553552
(Clone quality: bE32K2 on chr=7; Num_of_Contigs=2; )
PSME1 location ⇒ 7:81502878-81502660   CT961055,CH242-32K2,7:81442434-81553552
(Clone quality: bE32K2 on chr=7; Num_of_Contigs=2; )
PSME1 location ⇒ 7:81505360-81505238   CT961055,CH242-32K2,7:81442434-81553552
(Clone quality: bE32K2 on chr=7; Num_of_Contigs=2; )
PSME1 location ⇒ 7:81505360-81505238   CT961055,CH242-32K2,7:81442434-81553552
(Clone quality: bE32K2 on chr=7; Num_of_Contigs=2; )
PSME2 ENSSSCG00000002004 7:81495365-81498701   CT961055,CH242-32K2,7:81442434-81553552
(Clone quality: bE32K2 on chr=7; Num_of_Contigs=2; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-1800, 1801-1850, 1851-1900, 1901-1950, 1951-2000, 2001-2050, 2051-2100, 2101-2150, 2151-2200, 2201-21

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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