Pig genome annotation: A Gene Wish List

A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )

User Gene List	Genome Location (Chr.:start-end)	Fell within Finished BACs (Contig, BACname, Chr.:Start-End)	Fell within Unfinished Clones (SeqName, Chr.:Start-End)
Symbol	Owner/ Status	Ensembl Gene ID

FAM170A		ENSSSCG00000014228	2:111922068-111927728		CU466475,CH242-3M22,2:111879461-111970095 (Clone quality: bE3M22 on chr=2; Num_of_Contigs=9; )
FAM170B		ENSSSCG00000010387	14:93573674-93576117		CU468477,CH242-286G14,14:93530940-93581649 (Clone quality: bE286G14 on chr=14; Num_of_Contigs=3; )
FAM171A1		ENSSSCG00000011047	10:44467669-44529760
FAM171A2		ENSSSCG00000017356	12:16813047-16823268
FAM171B		ENSSSCG00000016029	15:86022158-86044001		CU914307,CH242-9E10,15:85994688-86094984 (Clone quality: bE9E10 on chr=15; Num_of_Contigs=1; )
FAM172A		ENSSSCG00000014159	2:90023235-90127376		CU695126,CH242-125K15,2:89998214-90149694 (Clone quality: bE125K15 on chr=2; Num_of_Contigs=2; )
FAM172B		ENSSSCG00000011957	13:115677964-115678945		CU633680,CH242-251F9,13:115560062-115745735 (Clone quality: bE251F9 on chr=13; Num_of_Contigs=2; )
FAM173A		ENSSSCG00000008004	3:35717027-35718607		FP016225,CH242-86N4,3:35707195-35730781 (Clone quality: bE86N4 on chr=3; Num_of_Contigs=9; )
FAM174A		ENSSSCG00000014179	2:95786941-95813098
FAM174B		ENSSSCG00000002265	7:95934590-95969381
FAM175A		ENSSSCG00000009234	8:116120483-116136247		CU468150,CH242-238L14,8:116078870-116150579 (Clone quality: bE238L14 on chr=8; Num_of_Contigs=7; )
FAM175B		ENSSSCG00000010737	14:141032847-141061590	CT827799,CH242-168I16,14:141005787-141188917 (Clone quality: bE168I16 on chr=14; Num_of_Contigs=2; )
FAM176A		ENSSSCG00000008260	3:62251687-62300526
FAM177A2		ENSSSCG00000001954	7:70582130-70598738		CU469145,CH242-277H7,7:70578492-70658893 (Clone quality: bE277H7 on chr=7; Num_of_Contigs=4; )
FAM177B		ENSSSCG00000010837	10:11658343-11662534		CU571292,CH242-3B15,10:11617743-11675267 (Clone quality: bE3B15 on chr=10; Num_of_Contigs=7; )
FAM178A		ENSSSCG00000010558	14:116914042-116914675		CU062549,CH242-28G23,14:116912943-116916299 (Clone quality: bE28G23 on chr=14; Num_of_Contigs=16; )
FAM178B		ENSSSCG00000008196	3:51974950-52260205
FAM179A		ENSSSCG00000008534	3:103158561-103315849
FAM180A		ENSSSCG00000016526	18:11941774-11954190		CU694894,CH242-34G1,18:11899902-12006322 (Clone quality: bE34G1 on chr=18; Num_of_Contigs=4; )
FAM180B		ENSSSCG00000013230	2:13089123-13090796		CU856103,CH242-271O6,2:12985573-13119992 (Clone quality: bE271O6 on chr=2; Num_of_Contigs=3; )
FAM181A		ENSSSCG00000002468	7:123525127-123525636		CU062574,CH242-419P8,7:123497626-123525644 (Clone quality: bE419P8 on chr=7; Num_of_Contigs=9; )
FAM181B		ENSSSCG00000014897	9:16995225-16996635
FAM184A		ENSSSCG00000004245	1:44842809-44909336
FAM184B		ENSSSCG00000008746	8:9627557-9647836
FAM185A		ENSSSCG00000015414	9:95777020-95823213		CU657969,CH242-168I18,9:95772082-95825075 (Clone quality: bE168I18 on chr=9; Num_of_Contigs=11; )
FAM186B		ENSSSCG00000000205	5:14396841-14404826
FAM187A		ENSSSCG00000017344	12:16329861-16331099		CU896578,CH242-101E18,12:16315123-16339681 (Clone quality: bE101E18 on chr=12; Num_of_Contigs=7; )
FAM188B		ENSSSCG00000016674	18:40578728-40625821
FAM189A1		ENSSSCG00000004850	1:152010232-152011117		CU861945,CH242-211I22,1:152008470-152014025 (Clone quality: bE211I22 on chr=1; Num_of_Contigs=9; )
FAM18B		ENSSSCG00000018027	12:55855689-55867211		FP102666,CH242-289K1,12:55841407-55944644 (Clone quality: bE289K1 on chr=12; Num_of_Contigs=2; )
FAM193B		ENSSSCG00000014038	2:69638396-69669969	FP067372,CH242-220F6,2:69614494-69671554 (Clone quality: bE220F6 on chr=2; Num_of_Contigs=8; )
FAM194B		ENSSSCG00000009418	11:20941987-20942386		CU914205,CH242-342O8,11:20934417-20946150 (Clone quality: bE342O8 on chr=11; Num_of_Contigs=14; )
FAM196B		ENSSSCG00000017010	16:51374832-51392563
FAM198A		ENSSSCG00000011294	13:22415371-22441583
FAM198B		ENSSSCG00000008873	8:40830429-40887546
FAM19A1		ENSSSCG00000011502	13:41654694-41767615
FAM19A3		ENSSSCG00000006773	4:112081990-112084005		CU463248,CH242-400P6,4:112002441-112085502 (Clone quality: bE400P6 on chr=4; Num_of_Contigs=4; )
FAM19A3		location ⇒	4:112082181-112082001		CU463248,CH242-400P6,4:112002441-112085502 (Clone quality: bE400P6 on chr=4; Num_of_Contigs=4; )
FAM19A4		ENSSSCG00000011503	13:41948919-41975789
FAM19A4		location ⇒	13:41951263-41951421		CU694990,CH242-523M6,13:41932802-41968762 (Clone quality: bE523M6 on chr=13; Num_of_Contigs=9; )
FAM19A4		location ⇒	13:42118375-42118256		CU856529,CH242-201B7,13:42054527-42202752 (Clone quality: bE201B7 on chr=13; Num_of_Contigs=1; )
FAM19A4		location ⇒	13:42120747-42120609		CU856529,CH242-201B7,13:42054527-42202752 (Clone quality: bE201B7 on chr=13; Num_of_Contigs=1; )
FAM19A4		location ⇒	13:42170100-42169985		CU856529,CH242-201B7,13:42054527-42202752 (Clone quality: bE201B7 on chr=13; Num_of_Contigs=1; )
FAM20A		ENSSSCG00000017258	12:9924353-9938270		CU856131,CH242-97P8,12:9920666-9943589 (Clone quality: bE97P8 on chr=12; Num_of_Contigs=7; )
FAM20B		ENSSSCG00000015524	9:113551563-113580502
FAM26D		ENSSSCG00000004445	1:86252686-86256924		CU442707,CH242-164J3,1:86234349-86418419 (Clone quality: bE164J3 on chr=1; Num_of_Contigs=1; )
FAM26E		ENSSSCG00000004443	1:86176703-86182221		CU074303,CH242-171D12,1:86170749-86187371 (Clone quality: bE171D12 on chr=1; Num_of_Contigs=13; )
FAM26F		ENSSSCG00000004444	1:86197271-86199118		CU074303,CH242-171D12,1:86196931-86200033 (Clone quality: bE171D12 on chr=1; Num_of_Contigs=13; )
FAM32A		ENSSSCG00000013855	2:60736173-60741047		CU463900,CH242-7B6,2:60719428-60778346 (Clone quality: bE7B6 on chr=2; Num_of_Contigs=11; )
FAM36A		ENSSSCG00000001218	7:24098654-24098968	CU313307,CH242-264E8,7:23910600-24118818 (Clone quality: bE264E8 on chr=7; Num_of_Contigs=4; )

User Gene List

Genome Location

(Chr.:start-end)

Fell within Finished BACs

(Contig, BACname, Chr.:Start-End)

Fell within Unfinished Clones

(SeqName, Chr.:Start-End)

Symbol

Owner/ Status

Ensembl Gene ID

FAM170A

ENSSSCG00000014228

2:111922068-111927728

CU466475,CH242-3M22,2:111879461-111970095
(Clone quality: bE3M22 on chr=2; Num_of_Contigs=9; )

FAM170B

ENSSSCG00000010387

14:93573674-93576117

CU468477,CH242-286G14,14:93530940-93581649
(Clone quality: bE286G14 on chr=14; Num_of_Contigs=3; )

FAM171A1

ENSSSCG00000011047

10:44467669-44529760

FAM171A2

ENSSSCG00000017356

12:16813047-16823268

FAM171B

ENSSSCG00000016029

15:86022158-86044001

CU914307,CH242-9E10,15:85994688-86094984
(Clone quality: bE9E10 on chr=15; Num_of_Contigs=1; )

FAM172A

ENSSSCG00000014159

2:90023235-90127376

CU695126,CH242-125K15,2:89998214-90149694
(Clone quality: bE125K15 on chr=2; Num_of_Contigs=2; )

FAM172B

ENSSSCG00000011957

13:115677964-115678945

CU633680,CH242-251F9,13:115560062-115745735
(Clone quality: bE251F9 on chr=13; Num_of_Contigs=2; )

FAM173A

ENSSSCG00000008004

3:35717027-35718607

FP016225,CH242-86N4,3:35707195-35730781
(Clone quality: bE86N4 on chr=3; Num_of_Contigs=9; )

FAM174A

ENSSSCG00000014179

2:95786941-95813098

FAM174B

ENSSSCG00000002265

7:95934590-95969381

FAM175A

ENSSSCG00000009234

8:116120483-116136247

CU468150,CH242-238L14,8:116078870-116150579
(Clone quality: bE238L14 on chr=8; Num_of_Contigs=7; )

FAM175B

ENSSSCG00000010737

14:141032847-141061590

CT827799,CH242-168I16,14:141005787-141188917
(Clone quality: bE168I16 on chr=14; Num_of_Contigs=2; )

FAM176A

ENSSSCG00000008260

3:62251687-62300526

FAM177A2

ENSSSCG00000001954

7:70582130-70598738

CU469145,CH242-277H7,7:70578492-70658893
(Clone quality: bE277H7 on chr=7; Num_of_Contigs=4; )

FAM177B

ENSSSCG00000010837

10:11658343-11662534

CU571292,CH242-3B15,10:11617743-11675267
(Clone quality: bE3B15 on chr=10; Num_of_Contigs=7; )

FAM178A

ENSSSCG00000010558

14:116914042-116914675

CU062549,CH242-28G23,14:116912943-116916299
(Clone quality: bE28G23 on chr=14; Num_of_Contigs=16; )

FAM178B

ENSSSCG00000008196

3:51974950-52260205

FAM179A

ENSSSCG00000008534

3:103158561-103315849

FAM180A

ENSSSCG00000016526

18:11941774-11954190

CU694894,CH242-34G1,18:11899902-12006322
(Clone quality: bE34G1 on chr=18; Num_of_Contigs=4; )

FAM180B

ENSSSCG00000013230

2:13089123-13090796

CU856103,CH242-271O6,2:12985573-13119992
(Clone quality: bE271O6 on chr=2; Num_of_Contigs=3; )

FAM181A

ENSSSCG00000002468

7:123525127-123525636

CU062574,CH242-419P8,7:123497626-123525644
(Clone quality: bE419P8 on chr=7; Num_of_Contigs=9; )

FAM181B

ENSSSCG00000014897

9:16995225-16996635

FAM184A

ENSSSCG00000004245

1:44842809-44909336

FAM184B

ENSSSCG00000008746

8:9627557-9647836

FAM185A

ENSSSCG00000015414

9:95777020-95823213

CU657969,CH242-168I18,9:95772082-95825075
(Clone quality: bE168I18 on chr=9; Num_of_Contigs=11; )

FAM186B

ENSSSCG00000000205

5:14396841-14404826

FAM187A

ENSSSCG00000017344

12:16329861-16331099

CU896578,CH242-101E18,12:16315123-16339681
(Clone quality: bE101E18 on chr=12; Num_of_Contigs=7; )

FAM188B

ENSSSCG00000016674

18:40578728-40625821

FAM189A1

ENSSSCG00000004850

1:152010232-152011117

CU861945,CH242-211I22,1:152008470-152014025
(Clone quality: bE211I22 on chr=1; Num_of_Contigs=9; )

FAM18B

ENSSSCG00000018027

12:55855689-55867211

FP102666,CH242-289K1,12:55841407-55944644
(Clone quality: bE289K1 on chr=12; Num_of_Contigs=2; )

FAM193B

ENSSSCG00000014038

2:69638396-69669969

FP067372,CH242-220F6,2:69614494-69671554
(Clone quality: bE220F6 on chr=2; Num_of_Contigs=8; )

FAM194B

ENSSSCG00000009418

11:20941987-20942386

CU914205,CH242-342O8,11:20934417-20946150
(Clone quality: bE342O8 on chr=11; Num_of_Contigs=14; )

FAM196B

ENSSSCG00000017010

16:51374832-51392563

FAM198A

ENSSSCG00000011294

13:22415371-22441583

FAM198B

ENSSSCG00000008873

8:40830429-40887546

FAM19A1

ENSSSCG00000011502

13:41654694-41767615

FAM19A3

ENSSSCG00000006773

4:112081990-112084005

CU463248,CH242-400P6,4:112002441-112085502
(Clone quality: bE400P6 on chr=4; Num_of_Contigs=4; )

FAM19A3

location ⇒

4:112082181-112082001

CU463248,CH242-400P6,4:112002441-112085502
(Clone quality: bE400P6 on chr=4; Num_of_Contigs=4; )

FAM19A4

ENSSSCG00000011503

13:41948919-41975789

FAM19A4

location ⇒

13:41951263-41951421

CU694990,CH242-523M6,13:41932802-41968762
(Clone quality: bE523M6 on chr=13; Num_of_Contigs=9; )

FAM19A4

location ⇒

13:42118375-42118256

CU856529,CH242-201B7,13:42054527-42202752
(Clone quality: bE201B7 on chr=13; Num_of_Contigs=1; )

FAM19A4

location ⇒

13:42120747-42120609

CU856529,CH242-201B7,13:42054527-42202752
(Clone quality: bE201B7 on chr=13; Num_of_Contigs=1; )

FAM19A4

location ⇒

13:42170100-42169985

CU856529,CH242-201B7,13:42054527-42202752
(Clone quality: bE201B7 on chr=13; Num_of_Contigs=1; )

FAM20A

ENSSSCG00000017258

12:9924353-9938270

CU856131,CH242-97P8,12:9920666-9943589
(Clone quality: bE97P8 on chr=12; Num_of_Contigs=7; )

FAM20B

ENSSSCG00000015524

9:113551563-113580502

FAM26D

ENSSSCG00000004445

1:86252686-86256924

CU442707,CH242-164J3,1:86234349-86418419
(Clone quality: bE164J3 on chr=1; Num_of_Contigs=1; )

FAM26E

ENSSSCG00000004443

1:86176703-86182221

CU074303,CH242-171D12,1:86170749-86187371
(Clone quality: bE171D12 on chr=1; Num_of_Contigs=13; )

FAM26F

ENSSSCG00000004444

1:86197271-86199118

CU074303,CH242-171D12,1:86196931-86200033
(Clone quality: bE171D12 on chr=1; Num_of_Contigs=13; )

FAM32A

ENSSSCG00000013855

2:60736173-60741047

CU463900,CH242-7B6,2:60719428-60778346
(Clone quality: bE7B6 on chr=2; Num_of_Contigs=11; )

FAM36A

ENSSSCG00000001218

7:24098654-24098968

CU313307,CH242-264E8,7:23910600-24118818
(Clone quality: bE264E8 on chr=7; Num_of_Contigs=4; )

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$version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010

Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
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