A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
DEFB4 location ⇒ 7:51216948-51216629   CU041392,CH242-299J7,7:51188966-51286068
(Clone quality: bE299J7 on chr=7; Num_of_Contigs=2; )
DEFB4 location ⇒ 7:51221244-51221164   CU041392,CH242-299J7,7:51188966-51286068
(Clone quality: bE299J7 on chr=7; Num_of_Contigs=2; )
DEGS2   ENSSSCG00000002512 7:130157106-130175281   CU640436,CH242-139P20,7:130153826-130175676
(Clone quality: bE139P20 on chr=7; Num_of_Contigs=19; )
DEK ENSSSCG00000001075 7:14537974-14570773 CT757470,CH242-196G4,7:14466620-14656772
(Clone quality: bE196G4 on chr=7; Num_of_Contigs=1; ) 		 
DEK location ⇒ 7:14538056-14537132 CT757470,CH242-196G4,7:14466620-14656772
(Clone quality: bE196G4 on chr=7; Num_of_Contigs=1; ) 		 
DEK location ⇒ 7:14538695-14538115 CT757470,CH242-196G4,7:14466620-14656772
(Clone quality: bE196G4 on chr=7; Num_of_Contigs=1; ) 		 
DEK location ⇒ 7:14543171-14543019 CT757470,CH242-196G4,7:14466620-14656772
(Clone quality: bE196G4 on chr=7; Num_of_Contigs=1; ) 		 
DEK location ⇒ 7:14557538-14557368 CT757470,CH242-196G4,7:14466620-14656772
(Clone quality: bE196G4 on chr=7; Num_of_Contigs=1; ) 		 
DEM1   ENSSSCG00000003980 6:122073903-122075015   CU694583,CH242-250P22,6:122065497-122229785
(Clone quality: bE250P22 on chr=6; Num_of_Contigs=1; )
DENND1A   ENSSSCG00000005585 1:278846563-279456646    
DENND1B   ENSSSCG00000010900 10:21683592-21868480    
DENND1C   ENSSSCG00000013546 2:49940368-50080340    
DENND2A   ENSSSCG00000016497 18:7610794-7702973    
DENND2D   ENSSSCG00000006797 4:113553784-113568329   CU468595,CH242-175A23,4:113550530-113589133
(Clone quality: bE175A23 on chr=4; Num_of_Contigs=4; )
DENND3   ENSSSCG00000005929 4:1451764-1491370   CU407190,CH242-272D18,4:1451678-1513192
(Clone quality: bE272D18 on chr=4; Num_of_Contigs=7; )
DENND4A   ENSSSCG00000004938 1:170845144-170926675    
DENND4B   ENSSSCG00000006568 4:99978615-99990851   CU407290,CH242-513B13,4:99976554-99996207
(Clone quality: bE513B13 on chr=4; Num_of_Contigs=7; )
DENND4C   ENSSSCG00000005170 1:212297948-212451085    
DENND5A   ENSSSCG00000014578 9:526092-586942    
DENR   ENSSSCG00000009788 14:30146703-30160841   CU468020,CH242-65H10,14:30110535-30186691
(Clone quality: bE65H10 on chr=14; Num_of_Contigs=4; )
DEPDC1B   ENSSSCG00000016932 16:37530628-37621913    
DEPDC4   ENSSSCG00000000878 5:79626852-79635364    
DEPDC5   ENSSSCG00000010034 14:49307821-49408102 CU062407,CH242-82N3,14:49222813-49419557
(Clone quality: bE82N3 on chr=14; Num_of_Contigs=7; ) 		 
DEPDC6   ENSSSCG00000005998 4:18673132-18837917    
DERA   ENSSSCG00000000599 5:54067210-54117156    
DERL1 ENSSSCG00000005990 4:15964156-16059245    
DERL1 location ⇒ 4:15962289-15962225   CU481489,CH242-309O2,4:15959789-15981497
(Clone quality: bE309O2 on chr=4; Num_of_Contigs=12; )
DERL1 location ⇒ 4:15970750-15970695   CU481489,CH242-309O2,4:15959789-15981497
(Clone quality: bE309O2 on chr=4; Num_of_Contigs=12; )
DERL1 location ⇒ 4:15979832-15979717   CU481489,CH242-309O2,4:15959789-15981497
(Clone quality: bE309O2 on chr=4; Num_of_Contigs=12; )
DERL1 location ⇒ 4:16059241-16058854   CU481489,CH242-309O2,4:16049219-16064149
(Clone quality: bE309O2 on chr=4; Num_of_Contigs=12; )
DERL3   ENSSSCG00000010069 14:50885555-50887617   CU570757,CH242-95E4,14:50714738-50917166
(Clone quality: bE95E4 on chr=14; Num_of_Contigs=1; )
DES location ⇒ 5:16110753-16110667   FP102426,CH242-14F8,5:16082451-16114612
(Clone quality: bE14F8 on chr=5; Num_of_Contigs=8; )
DES location ⇒ 5:16315996-16316053   CU930049,CH242-185F9,5:16314641-16317055
(Clone quality: bE185F9 on chr=5; Num_of_Contigs=28; )
DES location ⇒ 5:16538807-16538721   CU639398,CH242-183O5,5:16529515-16541314
(Clone quality: bE183O5 on chr=5; Num_of_Contigs=7; )
DES location ⇒ 5:16697284-16697199   CU457755,CH242-177O6,5:16641180-16699329
(Clone quality: bE177O6 on chr=5; Num_of_Contigs=3; )
DET1 ENSSSCG00000005103 1:200367605-200403221    
DEXI   ENSSSCG00000007902 3:28685631-28685918   CU467545,CH242-258E10,3:28667239-28708658
(Clone quality: bE258E10 on chr=3; Num_of_Contigs=21; )
DF location ⇒ 2:46146618-46146776   FP015903,CH242-504E7,2:46128360-46188530
(Clone quality: bE504E7 on chr=2; Num_of_Contigs=12; )
DF location ⇒ 2:46146862-46147006   FP015903,CH242-504E7,2:46128360-46188530
(Clone quality: bE504E7 on chr=2; Num_of_Contigs=12; )
DF location ⇒ 2:46147087-46147347   FP015903,CH242-504E7,2:46128360-46188530
(Clone quality: bE504E7 on chr=2; Num_of_Contigs=12; )
DF location ⇒ 2:46147751-46147976   FP015903,CH242-504E7,2:46128360-46188530
(Clone quality: bE504E7 on chr=2; Num_of_Contigs=12; )
DFFA ENSSSCG00000001989 7:81323833-81326724   CU019590,CH242-406B17,7:81281809-81421007
(Clone quality: bE406B17 on chr=7; Num_of_Contigs=4; )
DFFA ENSSSCG00000003404 6:47533874-47544230   CU929886,CH242-214O13,6:47459319-47565046
(Clone quality: bE214O13 on chr=6; Num_of_Contigs=3; )
DFFA ENSSSCG00000011557 13:55328371-55336332   CU633418,CH242-443E24,13:55326186-55338650
(Clone quality: bE443E24 on chr=13; Num_of_Contigs=9; )
DFFB ENSSSCG00000003364 6:44005980-44006210   FP102728,CH242-526K10,6:44004085-44008718
(Clone quality: bE526K10 on chr=6; Num_of_Contigs=5; )
DFNA5   ENSSSCG00000016716 18:46389507-46409536   CU463138,CH242-219O9,18:46380002-46424229
(Clone quality: bE219O9 on chr=18; Num_of_Contigs=4; )
DFNB31   ENSSSCG00000005490 1:268029491-268050489   CU618340,CH242-69F8,1:267997911-268096800
(Clone quality: bE69F8 on chr=1; Num_of_Contigs=5; )
DFNB59   ENSSSCG00000015998 15:79113489-79120097    
DGAT1   ENSSSCG00000005918 4:680047-689622   FP085492,CH242-176F2,4:677220-697185
(Clone quality: bE176F2 on chr=4; Num_of_Contigs=15; )
DGAT2 ENSSSCG00000014863 9:9790710-9833762    
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-16

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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