Pig genome annotation: A Gene Wish List

A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )

User Gene List	Genome Location (Chr.:start-end)	Fell within Finished BACs (Contig, BACname, Chr.:Start-End)	Fell within Unfinished Clones (SeqName, Chr.:Start-End)
Symbol	Owner/ Status	Ensembl Gene ID

KIF20A		ENSSSCG00000014326	2:127192946-127201756		CU928408,CH242-232M5,2:127160377-127220355 (Clone quality: bE232M5 on chr=2; Num_of_Contigs=3; )
KIF20B		ENSSSCG00000010457	14:106413724-106495706
KIF21A		ENSSSCG00000000779	5:66738566-66827477
KIF21A		location ⇒	5:66808403-66808223		FP236377,CH242-278H20,5:66790456-66829112 (Clone quality: bE278H20 on chr=5; Num_of_Contigs=4; )
KIF21A		location ⇒	5:66815291-66815100		FP236377,CH242-278H20,5:66790456-66829112 (Clone quality: bE278H20 on chr=5; Num_of_Contigs=4; )
KIF21A		location ⇒	5:66816186-66815988		FP236377,CH242-278H20,5:66790456-66829112 (Clone quality: bE278H20 on chr=5; Num_of_Contigs=4; )
KIF21A		location ⇒	5:66821402-66821287		FP236377,CH242-278H20,5:66790456-66829112 (Clone quality: bE278H20 on chr=5; Num_of_Contigs=4; )
KIF23		ENSSSCG00000004969	1:174828317-174867106
KIF24		ENSSSCG00000010984	10:31002225-31046727		CU914372,CH242-41I13,10:30969410-31050143 (Clone quality: bE41I13 on chr=10; Num_of_Contigs=10; )
KIF25		ENSSSCG00000004016	1:2048144-2057707		CU972416,CH242-123E8,1:2039206-2058145 (Clone quality: bE123E8 on chr=1; Num_of_Contigs=13; )
KIF26B		ENSSSCG00000010879	10:17787840-17979746
KIF2B		ENSSSCG00000017599	12:27408739-27410760		CU655872,CH242-181D5,12:27364235-27545652 (Clone quality: bE181D5 on chr=12; Num_of_Contigs=1; )
KIF2C		ENSSSCG00000003931	6:119379119-119434368
KIF3A		ENSSSCG00000014283	2:122912044-122979382	CU468216,CH242-85C7,2:122831928-123020434 (Clone quality: bE85C7 on chr=2; Num_of_Contigs=1; )
KIF3B		ENSSSCG00000007247	17:37934428-37950803		CU928633,CH242-263B18,17:37927432-37961442 (Clone quality: bE263B18 on chr=17; Num_of_Contigs=9; )
KIF3C		ENSSSCG00000008574	3:105513178-105514713		CU928139,CH242-96F7,3:105498762-105527582 (Clone quality: bE96F7 on chr=3; Num_of_Contigs=9; )
KIF5A		ENSSSCG00000000439	5:21758835-21824795
KIF5B		ENSSSCG00000011027	10:41029296-41083099
KIF6		ENSSSCG00000001594	7:39979519-40084407
KIF7		ENSSSCG00000001840	7:60468625-60474258		CT990467,CH242-141I20,7:60468381-60477408 (Clone quality: bE141I20 on chr=7; Num_of_Contigs=3; )
KIFAP3		ENSSSCG00000006282	4:83977784-84198353
KIFC1		ENSSSCG00000001510	7:34102153-34121088
KIFC3		ENSSSCG00000002812	6:19858518-19888589
KIR		ENSSSCG00000006105	4:43065408-43076341		CU407285,CH242-511L5,4:43058116-43141915 (Clone quality: bE511L5 on chr=4; Num_of_Contigs=2; )
KIR		location ⇒	6:41051696-41051768	CR450381,PigE-108A11,6:40950931-41074617 (No clone quality info on bT108A11)
KIR2DL2		location ⇒	6:41047866-41047951	CR450381,PigE-108A11,6:40950931-41074617 (No clone quality info on bT108A11)
KIR2DL2		location ⇒	6:41051682-41051794	CR450381,PigE-108A11,6:40950931-41074617 (No clone quality info on bT108A11)
KIR2DL2		location ⇒	6:41051682-41051794	CR450381,PigE-108A11,6:40950931-41074617 (No clone quality info on bT108A11)
KIR2DL2		location ⇒	6:92265085-92265150		CU695175,CH242-77M12,6:92225654-92314464 (Clone quality: bE77M12 on chr=6; Num_of_Contigs=5; )
KIR3DX1		ENSSSCG00000003283	6:41046734-41057508	CR450381,PigE-108A11,6:40950931-41074617 (No clone quality info on bT108A11)
KIRREL		ENSSSCG00000006453	4:95808680-95826526		CU856431,CH242-346J13,4:95765128-95946893 (Clone quality: bE346J13 on chr=4; Num_of_Contigs=1; )
KIRREL		location ⇒	9:52013221-52012944		CU463959,CH242-476I11,9:51995202-52080198 (Clone quality: bE476I11 on chr=9; Num_of_Contigs=5; )
KIRREL		location ⇒	9:52013363-52013295		CU463959,CH242-476I11,9:51995202-52080198 (Clone quality: bE476I11 on chr=9; Num_of_Contigs=5; )
KIRREL2		ENSSSCG00000002915	6:30434735-30442389		CU466979,CH242-510C11,6:30424288-30445425 (Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )
KIRREL2		location ⇒	6:30439567-30439672		CU466979,CH242-510C11,6:30424288-30445425 (Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )
KIRREL2		location ⇒	6:30439976-30440078		CU466979,CH242-510C11,6:30424288-30445425 (Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )
KIRREL2		location ⇒	6:30440426-30440494		CU466979,CH242-510C11,6:30424288-30445425 (Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )
KIRREL2		location ⇒	6:30441891-30442187		CU466979,CH242-510C11,6:30424288-30445425 (Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )
KIRREL3		ENSSSCG00000015234	9:52000663-52095609
KIRREL3		location ⇒	9:52001807-52001750		CU463959,CH242-476I11,9:51995202-52080198 (Clone quality: bE476I11 on chr=9; Num_of_Contigs=5; )
KIRREL3		location ⇒	9:52006110-52006001		CU463959,CH242-476I11,9:51995202-52080198 (Clone quality: bE476I11 on chr=9; Num_of_Contigs=5; )
KIRREL3		location ⇒	9:52007622-52007512		CU463959,CH242-476I11,9:51995202-52080198 (Clone quality: bE476I11 on chr=9; Num_of_Contigs=5; )
KIRREL3		location ⇒	9:52013109-52012909		CU463959,CH242-476I11,9:51995202-52080198 (Clone quality: bE476I11 on chr=9; Num_of_Contigs=5; )
KISS1		ENSSSCG00000015280	9:62422151-62424719		CU571280,CH242-206H18,9:62399988-62494411 (Clone quality: bE206H18 on chr=9; Num_of_Contigs=5; )
KISS1R		ENSSSCG00000013420	2:46178569-46185412		FP015903,CH242-504E7,2:46128360-46188530 (Clone quality: bE504E7 on chr=2; Num_of_Contigs=12; )
KIT		ENSSSCG00000000923	5:88150694-88150807		FP102720,CH242-513N15,5:88144848-88165839 (Clone quality: bE513N15 on chr=5; Num_of_Contigs=12; )
KIT		ENSSSCG00000000922	5:88083598-88248830
KIT		ENSSSCG00000008842	8:35758931-35827981
KIT		location ⇒	8:35758929-35759201		CU929000,CH242-11F18,8:35749412-35776122 (Clone quality: bE11F18 on chr=8; Num_of_Contigs=4; )
KIT		location ⇒	8:35763032-35763315		CU929000,CH242-11F18,8:35749412-35776122 (Clone quality: bE11F18 on chr=8; Num_of_Contigs=4; )

User Gene List

Genome Location

(Chr.:start-end)

Fell within Finished BACs

(Contig, BACname, Chr.:Start-End)

Fell within Unfinished Clones

(SeqName, Chr.:Start-End)

Symbol

Owner/ Status

Ensembl Gene ID

KIF20A

ENSSSCG00000014326

2:127192946-127201756

CU928408,CH242-232M5,2:127160377-127220355
(Clone quality: bE232M5 on chr=2; Num_of_Contigs=3; )

KIF20B

ENSSSCG00000010457

14:106413724-106495706

KIF21A

ENSSSCG00000000779

5:66738566-66827477

KIF21A

location ⇒

5:66808403-66808223

FP236377,CH242-278H20,5:66790456-66829112
(Clone quality: bE278H20 on chr=5; Num_of_Contigs=4; )

KIF21A

location ⇒

5:66815291-66815100

FP236377,CH242-278H20,5:66790456-66829112
(Clone quality: bE278H20 on chr=5; Num_of_Contigs=4; )

KIF21A

location ⇒

5:66816186-66815988

FP236377,CH242-278H20,5:66790456-66829112
(Clone quality: bE278H20 on chr=5; Num_of_Contigs=4; )

KIF21A

location ⇒

5:66821402-66821287

FP236377,CH242-278H20,5:66790456-66829112
(Clone quality: bE278H20 on chr=5; Num_of_Contigs=4; )

KIF23

ENSSSCG00000004969

1:174828317-174867106

KIF24

ENSSSCG00000010984

10:31002225-31046727

CU914372,CH242-41I13,10:30969410-31050143
(Clone quality: bE41I13 on chr=10; Num_of_Contigs=10; )

KIF25

ENSSSCG00000004016

1:2048144-2057707

CU972416,CH242-123E8,1:2039206-2058145
(Clone quality: bE123E8 on chr=1; Num_of_Contigs=13; )

KIF26B

ENSSSCG00000010879

10:17787840-17979746

KIF2B

ENSSSCG00000017599

12:27408739-27410760

CU655872,CH242-181D5,12:27364235-27545652
(Clone quality: bE181D5 on chr=12; Num_of_Contigs=1; )

KIF2C

ENSSSCG00000003931

6:119379119-119434368

KIF3A

ENSSSCG00000014283

2:122912044-122979382

CU468216,CH242-85C7,2:122831928-123020434
(Clone quality: bE85C7 on chr=2; Num_of_Contigs=1; )

KIF3B

ENSSSCG00000007247

17:37934428-37950803

CU928633,CH242-263B18,17:37927432-37961442
(Clone quality: bE263B18 on chr=17; Num_of_Contigs=9; )

KIF3C

ENSSSCG00000008574

3:105513178-105514713

CU928139,CH242-96F7,3:105498762-105527582
(Clone quality: bE96F7 on chr=3; Num_of_Contigs=9; )

KIF5A

ENSSSCG00000000439

5:21758835-21824795

KIF5B

ENSSSCG00000011027

10:41029296-41083099

KIF6

ENSSSCG00000001594

7:39979519-40084407

KIF7

ENSSSCG00000001840

7:60468625-60474258

CT990467,CH242-141I20,7:60468381-60477408
(Clone quality: bE141I20 on chr=7; Num_of_Contigs=3; )

KIFAP3

ENSSSCG00000006282

4:83977784-84198353

KIFC1

ENSSSCG00000001510

7:34102153-34121088

KIFC3

ENSSSCG00000002812

6:19858518-19888589

KIR

ENSSSCG00000006105

4:43065408-43076341

CU407285,CH242-511L5,4:43058116-43141915
(Clone quality: bE511L5 on chr=4; Num_of_Contigs=2; )

KIR

location ⇒

6:41051696-41051768

CR450381,PigE-108A11,6:40950931-41074617
(No clone quality info on bT108A11)

KIR2DL2

location ⇒

6:41047866-41047951

CR450381,PigE-108A11,6:40950931-41074617
(No clone quality info on bT108A11)

KIR2DL2

location ⇒

6:41051682-41051794

CR450381,PigE-108A11,6:40950931-41074617
(No clone quality info on bT108A11)

KIR2DL2

location ⇒

6:41051682-41051794

CR450381,PigE-108A11,6:40950931-41074617
(No clone quality info on bT108A11)

KIR2DL2

location ⇒

6:92265085-92265150

CU695175,CH242-77M12,6:92225654-92314464
(Clone quality: bE77M12 on chr=6; Num_of_Contigs=5; )

KIR3DX1

ENSSSCG00000003283

6:41046734-41057508

CR450381,PigE-108A11,6:40950931-41074617
(No clone quality info on bT108A11)

KIRREL

ENSSSCG00000006453

4:95808680-95826526

CU856431,CH242-346J13,4:95765128-95946893
(Clone quality: bE346J13 on chr=4; Num_of_Contigs=1; )

KIRREL

location ⇒

9:52013221-52012944

CU463959,CH242-476I11,9:51995202-52080198
(Clone quality: bE476I11 on chr=9; Num_of_Contigs=5; )

KIRREL

location ⇒

9:52013363-52013295

CU463959,CH242-476I11,9:51995202-52080198
(Clone quality: bE476I11 on chr=9; Num_of_Contigs=5; )

KIRREL2

ENSSSCG00000002915

6:30434735-30442389

CU466979,CH242-510C11,6:30424288-30445425
(Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )

KIRREL2

location ⇒

6:30439567-30439672

CU466979,CH242-510C11,6:30424288-30445425
(Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )

KIRREL2

location ⇒

6:30439976-30440078

CU466979,CH242-510C11,6:30424288-30445425
(Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )

KIRREL2

location ⇒

6:30440426-30440494

CU466979,CH242-510C11,6:30424288-30445425
(Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )

KIRREL2

location ⇒

6:30441891-30442187

CU466979,CH242-510C11,6:30424288-30445425
(Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )

KIRREL3

ENSSSCG00000015234

9:52000663-52095609

KIRREL3

location ⇒

9:52001807-52001750

CU463959,CH242-476I11,9:51995202-52080198
(Clone quality: bE476I11 on chr=9; Num_of_Contigs=5; )

KIRREL3

location ⇒

9:52006110-52006001

CU463959,CH242-476I11,9:51995202-52080198
(Clone quality: bE476I11 on chr=9; Num_of_Contigs=5; )

KIRREL3

location ⇒

9:52007622-52007512

CU463959,CH242-476I11,9:51995202-52080198
(Clone quality: bE476I11 on chr=9; Num_of_Contigs=5; )

KIRREL3

location ⇒

9:52013109-52012909

CU463959,CH242-476I11,9:51995202-52080198
(Clone quality: bE476I11 on chr=9; Num_of_Contigs=5; )

KISS1

ENSSSCG00000015280

9:62422151-62424719

CU571280,CH242-206H18,9:62399988-62494411
(Clone quality: bE206H18 on chr=9; Num_of_Contigs=5; )

KISS1R

ENSSSCG00000013420

2:46178569-46185412

FP015903,CH242-504E7,2:46128360-46188530
(Clone quality: bE504E7 on chr=2; Num_of_Contigs=12; )

KIT

ENSSSCG00000000923

5:88150694-88150807

FP102720,CH242-513N15,5:88144848-88165839
(Clone quality: bE513N15 on chr=5; Num_of_Contigs=12; )

KIT

ENSSSCG00000000922

5:88083598-88248830

KIT

ENSSSCG00000008842

8:35758931-35827981

KIT

location ⇒

8:35758929-35759201

CU929000,CH242-11F18,8:35749412-35776122
(Clone quality: bE11F18 on chr=8; Num_of_Contigs=4; )

KIT

location ⇒

8:35763032-35763315

CU929000,CH242-11F18,8:35749412-35776122
(Clone quality: bE11F18 on chr=8; Num_of_Contigs=4; )

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$version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010

Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
Search results:	Show Finished BAC Show unFinished BAC