Pig genome annotation: A Gene Wish List

A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )

User Gene List	Genome Location (Chr.:start-end)	Fell within Finished BACs (Contig, BACname, Chr.:Start-End)	Fell within Unfinished Clones (SeqName, Chr.:Start-End)
Symbol	Owner/ Status	Ensembl Gene ID

FBXL17		ENSSSCG00000014189	2:101503825-102025546
FBXL18		ENSSSCG00000007584	3:3855870-3862784		FP102569,CH242-151E19,3:3810739-3862785 (Clone quality: bE151E19 on chr=3; Num_of_Contigs=3; )
FBXL22		ENSSSCG00000004562	1:111799720-111800055		CU550694,CH242-9A12,1:111732090-111815643 (Clone quality: bE9A12 on chr=1; Num_of_Contigs=4; )
FBXL3		ENSSSCG00000009472	11:48079338-48096795		CU457401,CH242-185J22,11:48075315-48134547 (Clone quality: bE185J22 on chr=11; Num_of_Contigs=2; )
FBXL4		ENSSSCG00000004347	1:69263345-69310341
FBXL5		ENSSSCG00000008740	8:8149330-8183648
FBXL6		ENSSSCG00000005909	4:538974-542119
FBXL8		ENSSSCG00000002793	6:13399933-13402228		CU929920,CH242-351A16,6:13384865-13402282 (Clone quality: bE351A16 on chr=6; Num_of_Contigs=8; )
FBXO10		ENSSSCG00000005350	1:249642765-249665146
FBXO15		ENSSSCG00000004873	1:157106859-157314339
FBXO16		ENSSSCG00000009678	14:12207372-12260276	CT737356,CH242-131H21,14:12124099-12297761 (Clone quality: bE131H21 on chr=14; Num_of_Contigs=3; )
FBXO21		ENSSSCG00000009858	14:35577905-35615224		CT737179,CH242-7H2,14:35543952-35742587 (Clone quality: bE7H2 on chr=14; Num_of_Contigs=1; )
FBXO22		ENSSSCG00000001861	7:61544874-61548907		CT956014,CH242-235I9,7:61542428-61560385 (Clone quality: bE235I9 on chr=7; Num_of_Contigs=6; )
FBXO28		ENSSSCG00000010895	10:21122999-21151284
FBXO3		ENSSSCG00000013308	2:25555575-25592178	CU463884,CH242-311M11,2:25413051-25615449 (Clone quality: bE311M11 on chr=2; Num_of_Contigs=2; )
FBXO30		ENSSSCG00000004121	1:20669399-20675833		CU234205,CH242-264N6,1:20545994-20726803 (Clone quality: bE264N6 on chr=1; Num_of_Contigs=1; )
FBXO31		ENSSSCG00000002654	6:753140-796003
FBXO32		ENSSSCG00000005981	4:15473845-15503678		CU570913,CH242-163C10,4:15457711-15547917 (Clone quality: bE163C10 on chr=4; Num_of_Contigs=2; )
FBXO34		ENSSSCG00000005057	1:193268812-193269234		CU104729,CH242-24I13,1:193244219-193275244 (Clone quality: bE24I13 on chr=1; Num_of_Contigs=8; )
FBXO36		ENSSSCG00000016259	15:123474454-123483139
FBXO38		ENSSSCG00000014427	2:135240015-135279483
FBXO39		ENSSSCG00000017886	12:47884019-47887077		CU655858,CH242-208J3,12:47772347-47942311 (Clone quality: bE208J3 on chr=12; Num_of_Contigs=1; )
FBXO4		ENSSSCG00000016865	16:24070525-24084190		CU856627,CH242-119M13,16:24054744-24175262 (Clone quality: bE119M13 on chr=16; Num_of_Contigs=6; )
FBXO40		ENSSSCG00000011885	13:104418637-104424422
FBXO41		ENSSSCG00000008302	3:63872704-63882724
FBXO42		ENSSSCG00000003474	6:51771655-51817707		FP102812,CH242-132N24,6:51751116-51898805 (Clone quality: bE132N24 on chr=6; Num_of_Contigs=3; )
FBXO43		ENSSSCG00000006068	4:37297546-37309241		CU462943,CH242-324L13,4:37257956-37324718 (Clone quality: bE324L13 on chr=4; Num_of_Contigs=2; )
FBXO44		ENSSSCG00000003421	6:48634689-48639183		CU855519,CH242-273H12,6:48632450-48640513 (Clone quality: bE273H12 on chr=6; Num_of_Contigs=13; )
FBXO48		ENSSSCG00000008347	3:67807954-67813409		CU463812,CH242-231F9,3:67805537-67813770 (Clone quality: bE231F9 on chr=3; Num_of_Contigs=3; )
FBXO5		ENSSSCG00000004077	1:14334119-14344908		CU633523,CH242-64J2,1:14277020-14389478 (Clone quality: bE64J2 on chr=1; Num_of_Contigs=4; )
FBXO6		ENSSSCG00000003420	6:48614570-48632588
FBXO7		ENSSSCG00000000156	5:10687532-10708433	CU407156,CH242-210C11,5:10682170-10769531 (Clone quality: bE210C11 on chr=5; Num_of_Contigs=10; )
FBXO8		ENSSSCG00000009702	14:15435874-15471971
FBXO9		ENSSSCG00000002629	7:135896938-135921782
FBXO9		location ⇒	7:135904618-135904775		CU062466,CH242-13J19,7:135902472-135912934 (Clone quality: bE13J19 on chr=7; Num_of_Contigs=7; )
FBXO9		location ⇒	7:135910796-135910932		CU062466,CH242-13J19,7:135902472-135912934 (Clone quality: bE13J19 on chr=7; Num_of_Contigs=7; )
FBXO9		location ⇒	7:135915491-135915612		CU467955,CH242-394C19,7:135912935-135918193 (Clone quality: bE394C19 on chr=7; Num_of_Contigs=14; )
FBXO9		location ⇒	7:135918973-135919055		CU467955,CH242-394C19,7:135918294-135937384 (Clone quality: bE394C19 on chr=7; Num_of_Contigs=14; )
FBXW2		ENSSSCG00000005508	1:274394188-274421980		CU655953,CH242-53C18,1:274391348-274425528 (Clone quality: bE53C18 on chr=1; Num_of_Contigs=4; )
FBXW4		ENSSSCG00000010566	14:117501847-117600256
FBXW5		ENSSSCG00000005839	1:294232996-294235971		FP236151,CH242-517G10,1:294232528-294238661 (Clone quality: bE517G10 on chr=1; Num_of_Contigs=14; )
FBXW7		location ⇒	8:65710912-65710827		CU694742,CH242-56O8,8:65693651-65715359 (Clone quality: bE56O8 on chr=8; Num_of_Contigs=7; )
FBXW7		location ⇒	8:65746306-65746434		CU928321,CH242-36I7,8:65742920-65746789 (Clone quality: bE36I7 on chr=8; Num_of_Contigs=25; )
FBXW7		location ⇒	8:65794505-65794641		CU928321,CH242-36I7,8:65791316-65794896 (Clone quality: bE36I7 on chr=8; Num_of_Contigs=25; )
FBXW7		location ⇒	8:65802412-65802555		CU928321,CH242-36I7,8:65800452-65802733 (Clone quality: bE36I7 on chr=8; Num_of_Contigs=25; )
FBXW8		ENSSSCG00000009860	14:35710311-35839873
FBXW9		ENSSSCG00000013725	2:55944780-55950745		CU856041,CH242-32I13,2:55919380-55991729 (Clone quality: bE32I13 on chr=2; Num_of_Contigs=2; )
FCAMR		ENSSSCG00000015658	9:132130727-132145095		CU694720,CH242-352B19,9:132076515-132163275 (Clone quality: bE352B19 on chr=9; Num_of_Contigs=11; )
FCAMR		location ⇒	9:132135473-132135146		CU694720,CH242-352B19,9:132076515-132163275 (Clone quality: bE352B19 on chr=9; Num_of_Contigs=11; )
FCAMR		location ⇒	9:132141775-132141713		CU694720,CH242-352B19,9:132076515-132163275 (Clone quality: bE352B19 on chr=9; Num_of_Contigs=11; )

User Gene List

Genome Location

(Chr.:start-end)

Fell within Finished BACs

(Contig, BACname, Chr.:Start-End)

Fell within Unfinished Clones

(SeqName, Chr.:Start-End)

Symbol

Owner/ Status

Ensembl Gene ID

FBXL17

ENSSSCG00000014189

2:101503825-102025546

FBXL18

ENSSSCG00000007584

3:3855870-3862784

FP102569,CH242-151E19,3:3810739-3862785
(Clone quality: bE151E19 on chr=3; Num_of_Contigs=3; )

FBXL22

ENSSSCG00000004562

1:111799720-111800055

CU550694,CH242-9A12,1:111732090-111815643
(Clone quality: bE9A12 on chr=1; Num_of_Contigs=4; )

FBXL3

ENSSSCG00000009472

11:48079338-48096795

CU457401,CH242-185J22,11:48075315-48134547
(Clone quality: bE185J22 on chr=11; Num_of_Contigs=2; )

FBXL4

ENSSSCG00000004347

1:69263345-69310341

FBXL5

ENSSSCG00000008740

8:8149330-8183648

FBXL6

ENSSSCG00000005909

4:538974-542119

FBXL8

ENSSSCG00000002793

6:13399933-13402228

CU929920,CH242-351A16,6:13384865-13402282
(Clone quality: bE351A16 on chr=6; Num_of_Contigs=8; )

FBXO10

ENSSSCG00000005350

1:249642765-249665146

FBXO15

ENSSSCG00000004873

1:157106859-157314339

FBXO16

ENSSSCG00000009678

14:12207372-12260276

CT737356,CH242-131H21,14:12124099-12297761
(Clone quality: bE131H21 on chr=14; Num_of_Contigs=3; )

FBXO21

ENSSSCG00000009858

14:35577905-35615224

CT737179,CH242-7H2,14:35543952-35742587
(Clone quality: bE7H2 on chr=14; Num_of_Contigs=1; )

FBXO22

ENSSSCG00000001861

7:61544874-61548907

CT956014,CH242-235I9,7:61542428-61560385
(Clone quality: bE235I9 on chr=7; Num_of_Contigs=6; )

FBXO28

ENSSSCG00000010895

10:21122999-21151284

FBXO3

ENSSSCG00000013308

2:25555575-25592178

CU463884,CH242-311M11,2:25413051-25615449
(Clone quality: bE311M11 on chr=2; Num_of_Contigs=2; )

FBXO30

ENSSSCG00000004121

1:20669399-20675833

CU234205,CH242-264N6,1:20545994-20726803
(Clone quality: bE264N6 on chr=1; Num_of_Contigs=1; )

FBXO31

ENSSSCG00000002654

6:753140-796003

FBXO32

ENSSSCG00000005981

4:15473845-15503678

CU570913,CH242-163C10,4:15457711-15547917
(Clone quality: bE163C10 on chr=4; Num_of_Contigs=2; )

FBXO34

ENSSSCG00000005057

1:193268812-193269234

CU104729,CH242-24I13,1:193244219-193275244
(Clone quality: bE24I13 on chr=1; Num_of_Contigs=8; )

FBXO36

ENSSSCG00000016259

15:123474454-123483139

FBXO38

ENSSSCG00000014427

2:135240015-135279483

FBXO39

ENSSSCG00000017886

12:47884019-47887077

CU655858,CH242-208J3,12:47772347-47942311
(Clone quality: bE208J3 on chr=12; Num_of_Contigs=1; )

FBXO4

ENSSSCG00000016865

16:24070525-24084190

CU856627,CH242-119M13,16:24054744-24175262
(Clone quality: bE119M13 on chr=16; Num_of_Contigs=6; )

FBXO40

ENSSSCG00000011885

13:104418637-104424422

FBXO41

ENSSSCG00000008302

3:63872704-63882724

FBXO42

ENSSSCG00000003474

6:51771655-51817707

FP102812,CH242-132N24,6:51751116-51898805
(Clone quality: bE132N24 on chr=6; Num_of_Contigs=3; )

FBXO43

ENSSSCG00000006068

4:37297546-37309241

CU462943,CH242-324L13,4:37257956-37324718
(Clone quality: bE324L13 on chr=4; Num_of_Contigs=2; )

FBXO44

ENSSSCG00000003421

6:48634689-48639183

CU855519,CH242-273H12,6:48632450-48640513
(Clone quality: bE273H12 on chr=6; Num_of_Contigs=13; )

FBXO48

ENSSSCG00000008347

3:67807954-67813409

CU463812,CH242-231F9,3:67805537-67813770
(Clone quality: bE231F9 on chr=3; Num_of_Contigs=3; )

FBXO5

ENSSSCG00000004077

1:14334119-14344908

CU633523,CH242-64J2,1:14277020-14389478
(Clone quality: bE64J2 on chr=1; Num_of_Contigs=4; )

FBXO6

ENSSSCG00000003420

6:48614570-48632588

FBXO7

ENSSSCG00000000156

5:10687532-10708433

CU407156,CH242-210C11,5:10682170-10769531
(Clone quality: bE210C11 on chr=5; Num_of_Contigs=10; )

FBXO8

ENSSSCG00000009702

14:15435874-15471971

FBXO9

ENSSSCG00000002629

7:135896938-135921782

FBXO9

location ⇒

7:135904618-135904775

CU062466,CH242-13J19,7:135902472-135912934
(Clone quality: bE13J19 on chr=7; Num_of_Contigs=7; )

FBXO9

location ⇒

7:135910796-135910932

CU062466,CH242-13J19,7:135902472-135912934
(Clone quality: bE13J19 on chr=7; Num_of_Contigs=7; )

FBXO9

location ⇒

7:135915491-135915612

CU467955,CH242-394C19,7:135912935-135918193
(Clone quality: bE394C19 on chr=7; Num_of_Contigs=14; )

FBXO9

location ⇒

7:135918973-135919055

CU467955,CH242-394C19,7:135918294-135937384
(Clone quality: bE394C19 on chr=7; Num_of_Contigs=14; )

FBXW2

ENSSSCG00000005508

1:274394188-274421980

CU655953,CH242-53C18,1:274391348-274425528
(Clone quality: bE53C18 on chr=1; Num_of_Contigs=4; )

FBXW4

ENSSSCG00000010566

14:117501847-117600256

FBXW5

ENSSSCG00000005839

1:294232996-294235971

FP236151,CH242-517G10,1:294232528-294238661
(Clone quality: bE517G10 on chr=1; Num_of_Contigs=14; )

FBXW7

location ⇒

8:65710912-65710827

CU694742,CH242-56O8,8:65693651-65715359
(Clone quality: bE56O8 on chr=8; Num_of_Contigs=7; )

FBXW7

location ⇒

8:65746306-65746434

CU928321,CH242-36I7,8:65742920-65746789
(Clone quality: bE36I7 on chr=8; Num_of_Contigs=25; )

FBXW7

location ⇒

8:65794505-65794641

CU928321,CH242-36I7,8:65791316-65794896
(Clone quality: bE36I7 on chr=8; Num_of_Contigs=25; )

FBXW7

location ⇒

8:65802412-65802555

CU928321,CH242-36I7,8:65800452-65802733
(Clone quality: bE36I7 on chr=8; Num_of_Contigs=25; )

FBXW8

ENSSSCG00000009860

14:35710311-35839873

FBXW9

ENSSSCG00000013725

2:55944780-55950745

CU856041,CH242-32I13,2:55919380-55991729
(Clone quality: bE32I13 on chr=2; Num_of_Contigs=2; )

FCAMR

ENSSSCG00000015658

9:132130727-132145095

CU694720,CH242-352B19,9:132076515-132163275
(Clone quality: bE352B19 on chr=9; Num_of_Contigs=11; )

FCAMR

location ⇒

9:132135473-132135146

CU694720,CH242-352B19,9:132076515-132163275
(Clone quality: bE352B19 on chr=9; Num_of_Contigs=11; )

FCAMR

location ⇒

9:132141775-132141713

CU694720,CH242-352B19,9:132076515-132163275
(Clone quality: bE352B19 on chr=9; Num_of_Contigs=11; )

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$version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010

Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
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