mrkmerget

Retrieves the sets of markers that have been merged together.

Synopsis :

The mrkmerget command is invoked either as:

• mrkmerget Options

Description:

The command is used to retrieve the sets of markers that have been merged together.

Arguments:

• Options : -u to obtain the synopsys of the normal use, -h to print a one line description, -H to print a short help.

Returns :

a list of list of markers id. The first marker of a sublist represent the others.

Example :

# we first load a data set
CG> dsload Data/bc.cg
{1 f2 backcross 20 208 /home/tschiex/Dev/carthagene/doc/user/exemple/Data/b...
# and ask for markers that can be merged
CG> mrkdouble

Possible double markers:

                MS9 = MS10            [7.2]
                MS9 = MS14            [3.6]
               MS10 = MS11            [3.6]
               MS11 = MS14            [3.6]
               MS12 = MS13            [18.7]
               MS12 = MS14            [3.6]
               MS13 = MS14            [6.0]
               MS14 = MS16            [3.6]
               MS14 = MS17            [1.5]
               MS17 = MS18            [16.0]


# then merge markers 9 and 10 in 9.
CG> mrkmerge [mrkid MS9] [mrkid MS10]
Markers 9 and 10 merged in 9.

#...
CG> mrkmerge [mrkid MS12] [mrkid MS13]
Markers 12 and 13 merged in 12.

CG> mrkmerge [mrkid MS12] [mrkid MS14]
Markers 12 and 14 merged in 12.

#retrive the information
CG> mrkmerget
{9 10 } {12 13 14 }

See also:

• mrkmerge (2.3.9)